1OXV

Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1oxva1	All beta proteins	OB-fold	MOP-like	ABC-transporter additional domain	Glucose transport protein GlcV, N-terminal domain	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)
A	d1oxva2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like	Glucose transport protein GlcV, N-terminal domain	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)
B	d1oxvb1	All beta proteins	OB-fold	MOP-like	ABC-transporter additional domain	Glucose transport protein GlcV, N-terminal domain	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)
B	d1oxvb2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like	Glucose transport protein GlcV, N-terminal domain	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)
C [auth D]	d1oxvd1	All beta proteins	OB-fold	MOP-like	ABC-transporter additional domain	Glucose transport protein GlcV, N-terminal domain	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)
C [auth D]	d1oxvd2	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ABC transporter ATPase domain-like	Glucose transport protein GlcV, N-terminal domain	(Saccharolobus solfataricus ) [TaxId: 2287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ABC transporter-like P-loop ATPases	8018329	3002020	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MOP-like	8018333	3000099	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ABC transporter-like P-loop ATPases	8018329	3002020	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MOP-like	8018333	3000099	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	ABC transporter-like P-loop ATPases	8018329	3002020	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	MOP-like	8018333	3000099	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF07552	e1oxvA1	A: beta barrels	X: OB-fold	H: MOP-like (From Topology)	T: MOP-like	F: EUF07552	ECOD (1.6)
A	UNK_F_TYPE	e1oxvA3	A: beta barrels	X: OB-fold	H: MOP-like (From Topology)	T: MOP-like	F: UNK_F_TYPE	ECOD (1.6)
A	ABC_tran	e1oxvA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ABC_tran	ECOD (1.6)
B	EUF07552	e1oxvB1	A: beta barrels	X: OB-fold	H: MOP-like (From Topology)	T: MOP-like	F: EUF07552	ECOD (1.6)
B	UNK_F_TYPE	e1oxvB3	A: beta barrels	X: OB-fold	H: MOP-like (From Topology)	T: MOP-like	F: UNK_F_TYPE	ECOD (1.6)
B	ABC_tran	e1oxvB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ABC_tran	ECOD (1.6)
C [auth D]	EUF07552	e1oxvD1	A: beta barrels	X: OB-fold	H: MOP-like (From Topology)	T: MOP-like	F: EUF07552	ECOD (1.6)
C [auth D]	UNK_F_TYPE	e1oxvD3	A: beta barrels	X: OB-fold	H: MOP-like (From Topology)	T: MOP-like	F: UNK_F_TYPE	ECOD (1.6)
C [auth D]	ABC_tran	e1oxvD2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ABC_tran	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
A	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
B	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
C [auth D]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C [auth D]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
C [auth D]	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D]	PF17847	Glucose ABC transporter C-terminal domain (GlcV_C_terminal)	Glucose ABC transporter C-terminal domain	This is the C-terminal domain found at the ATPase subunit of the glucose ABC transporter from Sulfolobus solfataricus. Overall, the C-terminal domain (residues 243-353) contains only beta-strands, which form an elongated barrel-shaped structure compo ...	This is the C-terminal domain found at the ATPase subunit of the glucose ABC transporter from Sulfolobus solfataricus. Overall, the C-terminal domain (residues 243-353) contains only beta-strands, which form an elongated barrel-shaped structure composed of two parts. This entry represents the upper part which includes a three-stranded anti-parallel beta-sheets and two small anti-parallel beta-strands. The overall structure of this domain is very similar to that of the C-terminal domain of MalK from T. litoralis however, the function of the C-terminal domain in GlcV is not clear [1].	Domain
A, B, C [auth D]	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D]	ABC transporter, ATP binding protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity ferric iron transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity iron ion transmembrane transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity ATP-dependent activity active monoatomic ion transmembrane transporter activity ABC-type ferric iron transporter activity active transmembrane transporter activity ABC-type transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transition metal ion transmembrane transporter activity metal ion transmembrane transporter activity transmembrane transporter activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	-	ATPase dependent transmembrane transport complex ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex cellular anatomical entity transporter complex ATP-binding cassette (ABC) transporter complex cell periphery transmembrane transporter complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A, B, C [auth D]	IPR047641	ABC transporter, ATP-binding protein MalK/UgpC-like	Family
A, B, C [auth D]	IPR040856	Glucose ABC transporter, C-terminal	Domain
A, B, C [auth D]	IPR015853	ABC transporter, ferric cation import, FbpC	Domain
A, B, C [auth D]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A, B, C [auth D]	IPR053598	ABC transporter glucose import ATPase	Family
A, B, C [auth D]	IPR003593	AAA+ ATPase domain	Domain
A, B, C [auth D]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, B, C [auth D]	IPR008995	Molybdate/tungstate binding, C-terminal	Homologous Superfamily
A, B, C [auth D]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.