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Structure of CSCBM6-3 From Clostridium stercorarium in complex with laminaribiose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NAE PDB ENTRY 1NAE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 pH 4.60
Crystal Properties Matthews coefficient Solvent content 1.76 29.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.183 α = 90 b = 52.154 β = 90 c = 64.755 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 40 97.2 0.053 17.8 4.5 61302
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.06 94.2 0.409 3.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NAE 1 40.49 61302 3282 96.9 0.132 0.131 0.149 0.1641 RANDOM 8.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 0.21 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.763 r_angle_other_deg 3.958 r_scangle_it 3.749 r_scbond_it 2.653 r_mcangle_it 2.568 r_angle_refined_deg 2.007 r_mcbond_it 1.848 r_nbd_refined 0.328 r_symmetry_vdw_refined 0.321 r_symmetry_vdw_other 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.763 r_angle_other_deg 3.958 r_scangle_it 3.749 r_scbond_it 2.653 r_mcangle_it 2.568 r_angle_refined_deg 2.007 r_mcbond_it 1.848 r_nbd_refined 0.328 r_symmetry_vdw_refined 0.321 r_symmetry_vdw_other 0.318 r_symmetry_hbond_refined 0.311 r_nbd_other 0.293 r_xyhbond_nbd_refined 0.257 r_nbtor_other 0.136 r_chiral_restr 0.116 r_metal_ion_refined 0.075 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 966 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling AMoRE phasing