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Crystal structure of a Fab complex whith Plasmodium falciparum MSP1-19
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IGF PDB ENTRIES 2IGF, 1A3R, 1B9W experimental model PDB 1A3R PDB ENTRIES 2IGF, 1A3R, 1B9W experimental model PDB 1B9W PDB ENTRIES 2IGF, 1A3R, 1B9W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.075M SODIUM ACETATE 0.038M SODIUM CACODYLATE, 11.3% PEG8000, 3% DIOXANE, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.75 α = 90 b = 213.46 β = 100.95 c = 59.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2001-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 96.8 0.071 16.5 3.39 27530
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 87.6 0.578 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 2IGF, 1A3R, 1B9W 2.9 105.41 25850 1368 96.6 0.258 0.257 0.2526 0.288 RANDOM 11.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.63 1.44 3.19 -4.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.478 r_dihedral_angle_1_deg 3.529 r_angle_other_deg 1.267 r_scangle_it 1.083 r_scbond_it 0.673 r_symmetry_vdw_refined 0.363 r_mcangle_it 0.355 r_symmetry_hbond_refined 0.311 r_nbd_refined 0.292 r_xyhbond_nbd_refined 0.188
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.478 r_dihedral_angle_1_deg 3.529 r_angle_other_deg 1.267 r_scangle_it 1.083 r_scbond_it 0.673 r_symmetry_vdw_refined 0.363 r_mcangle_it 0.355 r_symmetry_hbond_refined 0.311 r_nbd_refined 0.292 r_xyhbond_nbd_refined 0.188 r_mcbond_it 0.187 r_chiral_restr 0.088 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_refined_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8132 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing