☰ Navigation Tabs
A new MgGDP complex of the Ffh NG domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FFH PDB ENTRY 1FFH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 4.0 M SODIUM FORMATE, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.76 55.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.415 α = 90 b = 113.631 β = 111.76 c = 61.382 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 1998-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.5 0.045 24.1 3.2 40999 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 99.9 0.159 6.1 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB ENTRY 1FFH 2.1 56.8 38000 2023 97.1 0.197 0.195 0.2024 0.237 0.2419 RANDOM 23.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.45 -0.64 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.567 r_scangle_it 4.527 r_scbond_it 2.654 r_angle_refined_deg 1.669 r_mcangle_it 1.58 r_angle_other_deg 0.881 r_mcbond_it 0.849 r_symmetry_vdw_other 0.32 r_symmetry_hbond_refined 0.247 r_nbd_other 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.567 r_scangle_it 4.527 r_scbond_it 2.654 r_angle_refined_deg 1.669 r_mcangle_it 1.58 r_angle_other_deg 0.881 r_mcbond_it 0.849 r_symmetry_vdw_other 0.32 r_symmetry_hbond_refined 0.247 r_nbd_other 0.243 r_symmetry_vdw_refined 0.215 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.087 r_nbtor_other 0.085 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4540 Nucleic Acid Atoms Solvent Atoms 274 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing