☰ Navigation Tabs
Tp47, the 47-Kilodalton Lipoprotein of Treponema pallidum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 32% PEG 4000, 100 MM SODIUM CITRATE PH 5.6, 200 MM AMMONIUM ACETATE,3% (W/V) DEXTRAN SULFATE 8000
Crystal Properties Matthews coefficient Solvent content 3.97 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.931 α = 90 b = 128.931 β = 90 c = 151.161 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APS SBC2 DUAL SLITS 2001-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 28.2 99.8 0.058 21.4 4.5 478972 25.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 100 0.702 1.9 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 28.2 101021 5036 99.8 0.205 0.205 0.2135 0.228 0.2358 RANDOM 43.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.91 0.56 -1.12
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.2 c_scangle_it 3.7 c_mcangle_it 2.48 c_scbond_it 2.47 c_mcbond_it 1.58 c_angle_deg 1.41 c_improper_angle_d 0.74 c_bond_d 0.0098 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.2 c_scangle_it 3.7 c_mcangle_it 2.48 c_scbond_it 2.47 c_mcbond_it 1.58 c_angle_deg 1.41 c_improper_angle_d 0.74 c_bond_d 0.0098 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6237 Nucleic Acid Atoms Solvent Atoms 619 Heterogen Atoms 44
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling MLPHARE phasing