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Structure of CsCBM6-3 from Clostridium stercorarium in complex with xylotriose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GMM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 291 26%PEG 4K, 0.1 M sodium acetate, pH 4.6, 0.2 M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.63 24.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.648 α = 90 b = 49.746 β = 93.18 c = 36.082 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH long mirror focused 2002-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 36.04 0.07 0.07 12.4 2.3 6680 6382 20.33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.12 0.186 0.186 5.4 2.2 649
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1gmm 2.05 36.04 5544 279 87.34 0.13748 0.13748 0.1345 0.1432 0.19487 0.2086 RANDOM 19.907
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 -0.1 -0.04 -0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.15 r_scangle_it 3.132 r_scbond_it 2.276 r_angle_refined_deg 1.528 r_mcangle_it 1.353 r_mcbond_it 0.771 r_symmetry_vdw_refined 0.223 r_symmetry_hbond_refined 0.214 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.15 r_scangle_it 3.132 r_scbond_it 2.276 r_angle_refined_deg 1.528 r_mcangle_it 1.353 r_mcbond_it 0.771 r_symmetry_vdw_refined 0.223 r_symmetry_hbond_refined 0.214 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.103 r_metal_ion_refined 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 952 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 29
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement