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T. aquaticus Ffh NG Domain at 1.1A Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FFH PDB ENTRY 1ffh
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 PEGMME550, MGCl2, TAPS, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.07 40.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.734 α = 90 b = 53.675 β = 119.92 c = 57.836 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.98 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50 95.4 0.037 0.037 4.27 102368 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.12 90 0.324 0.324 3.2 2.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR SUBSTITUTION THROUGHOUT PDB ENTRY 1ffh 1.1 50 97286 92430 4856 90.65 0.1371 0.13713 0.13547 0.1355 0.1685 0.1683 RANDOM 20.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.935 r_dihedral_angle_3_deg 16.078 r_sphericity_bonded 11.339 r_scangle_it 10.391 r_scbond_it 7.123 r_dihedral_angle_1_deg 4.834 r_mcangle_it 4.65 r_rigid_bond_restr 4.063 r_mcbond_it 3.451 r_angle_refined_deg 2.093
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.935 r_dihedral_angle_3_deg 16.078 r_sphericity_bonded 11.339 r_scangle_it 10.391 r_scbond_it 7.123 r_dihedral_angle_1_deg 4.834 r_mcangle_it 4.65 r_rigid_bond_restr 4.063 r_mcbond_it 3.451 r_angle_refined_deg 2.093 r_angle_other_deg 1.146 r_xyhbond_nbd_other 0.459 r_xyhbond_nbd_refined 0.248 r_nbd_refined 0.247 r_symmetry_vdw_other 0.22 r_nbd_other 0.194 r_symmetry_vdw_refined 0.185 r_chiral_restr 0.182 r_symmetry_hbond_refined 0.172 r_bond_refined_d 0.025 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5073 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building REFMAC refinement X-PLOR phasing