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Internalin H: crystal structure of fused N-terminal domains.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1D0B PDB ENTRY 1D0B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 293 10% PEG 8000, 0.1M TRIS PH 7.0, 0.2 M MGCL2. T=20C, PROTEIN CONC.=10 MG/ML
Crystal Properties Matthews coefficient Solvent content 2.17 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.481 α = 90 b = 100.682 β = 90 c = 119.931 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RAXIS IV++ OSMIC CONFOCAL MIRRORS 2000-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 61 95.3 0.033 22 2 37671
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 91.2 0.162 7.42 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1D0B 1.8 76.7 30497 1652 98.4 0.17 0.167 0.217 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.47 r_scbond_it 3.544 r_mcangle_it 2.188 r_angle_other_deg 1.989 r_mcbond_it 1.343 r_dihedral_angle_3_deg 1.018 r_symmetry_hbond_refined 0.752 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.221 r_nbd_other 0.213
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.47 r_scbond_it 3.544 r_mcangle_it 2.188 r_angle_other_deg 1.989 r_mcbond_it 1.343 r_dihedral_angle_3_deg 1.018 r_symmetry_hbond_refined 0.752 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.221 r_nbd_other 0.213 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_other 0.163 r_chiral_restr 0.141 r_bond_refined_d 0.025 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2296 Nucleic Acid Atoms Solvent Atoms 403 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing