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Endoglucanase cel12A from Rhodothermus marinus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NLR PDB ENTRY 1NLR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1M HEPES, PH7.5, 20% PEG10000, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.49 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.099 α = 90 b = 67.779 β = 90 c = 132.262 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2001-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 93.4 0.074 27.7 6.9 44464 17.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 88.1 0.275 5.5 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NLR 1.8 28.49 44412 2258 93.4 0.173 0.173 0.1675 0.194 0.1835 RANDOM 22.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 1.17 -2.37
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.45402 c_angle_deg 1.33766 c_scangle_it 1.047 c_improper_angle_d 0.92555 c_mcangle_it 0.916 c_scbond_it 0.639 c_mcbond_it 0.51 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.45402 c_angle_deg 1.33766 c_scangle_it 1.047 c_improper_angle_d 0.92555 c_mcangle_it 0.916 c_scbond_it 0.639 c_mcbond_it 0.51 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3548 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 30
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing