☰ Navigation Tabs
EPID H67N COMPLEXED WITH SUBSTRATE PEPTIDE DSYTC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other tetramer from EpiD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 100 mM MES/NaOH, 30 % MPD, 10 mM Peptide DSYTC, 3 mM DTT, 120 mM Glycine, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 5.82 79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 223.552 α = 90 b = 223.552 β = 90 c = 223.552 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH 2000-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.0499 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 20 93.2 0.068 6.8 12.2 2.7 151692 151692 47.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.57 2.68 59.4 0.349 2 2.1 5205
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT tetramer from EpiD 2.57 19.92 56352 56352 2881 95.8 0.209 0.226 RANDOM 50
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation o_dihedral_angle_d 22.9 o_scangle_it 3.12 o_mcangle_it 2.06 o_scbond_it 2.06 o_angle_deg 1.3 o_mcbond_it 1.22 o_improper_angle_d 0.9 o_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5764 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 140
Software Software Software Name Purpose AMoRE phasing CNS refinement MOSFLM data reduction CCP4 data scaling