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CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WITH TWO DIFFERENT BOUND LIGANDS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Fibringogen 86 kDa fragment D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 12% PEG 3350, 50 MM TRIS PH 7.0, 5 MM CALCIUM CHLORIDE, 1MM SODIUM AZIDE, 5MM GLY-PRO-ARG-PRO-AMIDE, 5MM GLY-HIS-ARG-PRO-AMIDE
Crystal Properties Matthews coefficient Solvent content 2.66 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.443 α = 90 b = 95.6 β = 90.19 c = 113.641 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 1997-08-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 94.5 0.093 4.6 81010
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT FIBRINOGEN FRAGMENT D 2.3 20 81081 4086 94.5 0.22 0.29 RANDOM 17.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_planar_d 25.985 p_angle_d 3.521 p_hb_or_metal_coord 2.579 p_bond_d 0.016 p_angle_deg p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_plane_restr
RMS Deviations Key Refinement Restraint Deviation p_planar_d 25.985 p_angle_d 3.521 p_hb_or_metal_coord 2.579 p_bond_d 0.016 p_angle_deg p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_plane_restr p_chiral_restr p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11092 Nucleic Acid Atoms Solvent Atoms 431 Heterogen Atoms 71
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling X-PLOR model building X-PLOR refinement X-PLOR phasing