1E95
Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 | ||||
2 | DQF-COSY | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 | ||||
3 | TOCSY | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 | ||||
4 | 31P-1H HETCOR | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 | ||||
5 | HMQC | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 | ||||
6 | 31P-1H HETERO-TOCSY-NOESY | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 | ||||
7 | NOESY-HMQC | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 | ||||
8 | HCCH-TOCSY | 100 MM NACL, 10 MM K2HPO4/KH2PO4 | 6.4 | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | LEAST RESTRAINT VIOLATIONS, LOWEST ENERGY |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 15 |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.851 | BRUNGER |
2 | structure solution | X-PLOR |