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Beta-apical domain of thermosome
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ASS PDB ENTRY 1ASS WITHOUT I245-K274
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.1 pH 9.10
Crystal Properties Matthews coefficient Solvent content 2.83 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.32 α = 90 b = 57.32 β = 90 c = 106.14 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRROR 1998-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 25 97.8 0.041 27 3.7 5170 95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.87 96.8 0.393 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ASS WITHOUT I245-K274 2.8 15 2 4984 266 94.6 0.261 0.261 0.2701 0.318 0.3055 RANDOM 76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.799 -8.908 -4.799 9.597
RMS Deviations Key Refinement Restraint Deviation c_mcangle_it 2.79 c_scangle_it 2.61 c_scbond_it 1.58 c_mcbond_it 1.55 c_angle_deg 1.33994 c_bond_d 0.007567 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_mcangle_it 2.79 c_scangle_it 2.61 c_scbond_it 1.58 c_mcbond_it 1.55 c_angle_deg 1.33994 c_bond_d 0.007567 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1160 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing