1D6X
THE STRUCTURE OF THE ANTIMICROBIAL PEPTIDE TRITRPTICIN BOUND TO MICELLES-A DISTINCT MEMBRANE-BOUND PEPTIDE FOLD
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 3 MM TRITRPTICIN, 400 MM PERDEUTERATED SDS | 400 mM SDS | 4.5 | AMBIENT | 313 | ||
2 | DQF-COSY | 3 MM TRITRPTICIN, 400 MM PERDEUTERATED SDS | 400 mM SDS | 4.5 | AMBIENT | 313 | ||
3 | TOCSY | 3 MM TRITRPTICIN, 400 MM PERDEUTERATED SDS | 400 mM SDS | 4.5 | AMBIENT | 313 | ||
4 | 2D NOESY | 3 MM TRITRPTICIN, 400 MM PERDEUTERATED SDS | 400 mM SDS | 4.5 | AMBIENT | 313 | ||
5 | TOCSY | 3 MM TRITRPTICIN, 400 MM PERDEUTERATED SDS | 400 mM SDS | 4.5 | AMBIENT | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
RESTRAINED SIMULATED ANNEALING MOLECULAR DYNAMICS | THE STRUCTURES ARE BASED ON 163 INTERPROTON RESTRAINTS. OF THESE 47 WERE INTRARESIDUE, 50 SEQUENTIAL, AND 66 SHORT-RANGE | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with favorable non-bond energy |
Conformers Calculated Total Number | 97 |
Conformers Submitted Total Number | 19 |
Representative Model | 19 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 5.0 | DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER, BAX |
2 | refinement | CNS | 0.9 | BRUNGER, ADAMS, CLORE, DELANO, GROS, GROSSE-KUNSTLEVE, JIANG, KUSZEWSKI, NILGES, PANNU, READ, RICE, SIMONSON, WARREN |