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 12DM | pdb_000012dm

AHA hibernation factor bound to the 70S ribosome of Haloferax volcanii


ELECTRON MICROSCOPY
Sample
70S H. volcanii ribosome bound to the AHA hibernation factor and E-site tRNA
Sample Components
H. volcanii 50S
H. volcanii 30S
CBS domain protein
E-site tRNA
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles82088
Reported Resolution (Å)2.4
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)50.5081
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)200
Maximum Defocus (nm)2400
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARC4.5.3
IMAGE ACQUISITIONEPU
CTF CORRECTIONcryoSPARC4.5.3
INITIAL EULER ASSIGNMENTcryoSPARC4.5.3
FINAL EULER ASSIGNMENTcryoSPARC4.5.3
CLASSIFICATIONcryoSPARC4.5.3
RECONSTRUCTIONcryoSPARC4.5.3
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE1114331Ribosomal particles were identified using reference-free blob picking (particle diameter 170 to 250 A; 440 pixel box size)