10SF | pdb_000010sf

The CryoEM structure of T10 type1 nanofiber


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined33.435
r_long_range_B_other33.424
r_mcangle_it21.232
r_mcangle_other21.22
r_scangle_other21.183
r_mcbond_it12.859
r_mcbond_other12.85
r_scbond_it11.604
r_scbond_other11.598
r_dihedral_angle_2_deg10.679
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined33.435
r_long_range_B_other33.424
r_mcangle_it21.232
r_mcangle_other21.22
r_scangle_other21.183
r_mcbond_it12.859
r_mcbond_other12.85
r_scbond_it11.604
r_scbond_other11.598
r_dihedral_angle_2_deg10.679
r_dihedral_angle_3_deg8.074
r_dihedral_angle_1_deg5.6
r_angle_refined_deg1.695
r_angle_other_deg0.828
r_chiral_restr0.051
r_bond_refined_d0.008
r_gen_planes_refined0.008
r_gen_planes_other0.004
r_bond_other_d0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
T10 type1 nanofiber
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles35
Reported Resolution (Å)3.08
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.79
Angular Rotation-0.698
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1200
Maximum Defocus (nm)1800
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION
MODEL REFINEMENTREFMAC5.8.0430
RECONSTRUCTIONServalcat
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING ONLY