Annotations: 9RBU

Cryo-ET structure of full-length membrane-bound EHD2 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	EF-hand	8093360	3001983	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ras-like P-loop GTPases	8093358	3002022	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EF-hand	8093360	3001983	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ras-like P-loop GTPases	8093358	3002022	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EF-hand	8093360	3001983	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ras-like P-loop GTPases	8093358	3002022	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8093358	3002022	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	EF-hand	8093360	3001983	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	EHD composite domain-like	8093356	3002700	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF12763	EH domain (EH)	EH domain	This entry represents the EH domain.	Domain
A, B, C, D	PF16880	N-terminal EH-domain containing protein (EHD_N)	N-terminal EH-domain containing protein	-	Family
A, B, C, D	PF00350	Dynamin family (Dynamin_N)	Dynamin family		Domain
A, B, C, D	PF18150	Domain of unknown function (DUF5600) (DUF5600)	Domain of unknown function (DUF5600)	This domain can be found in EH-domain-containing ATPase 2 (EHD2) present in Mus musculus. The domain is helical in nature and has extensive contacts with the G-domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	EH domain-containing protein 2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding protein domain specific binding hydrolase activity catalytic activity guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding protein domain specific binding hydrolase activity catalytic activity guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding protein-macromolecule adaptor activity molecular adaptor activity adenyl ribonucleotide binding adenyl nucleotide binding ATP binding identical protein binding	import into cell localization transport endocytosis establishment of localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization cellular process intracellular protein localization localization within membrane protein localization to membrane regulation of localization import into cell localization transport endocytosis establishment of localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization cellular process intracellular protein localization localization within membrane protein localization to membrane regulation of localization regulation of cellular process positive regulation of biological process vesicle-mediated transport endocytic recycling establishment of localization in cell positive regulation of intracellular transport regulation of endocytic recycling positive regulation of cellular process regulation of intracellular transport regulation of biological process regulation of transport positive regulation of endocytic recycling biological regulation intracellular transport regulation of vesicle-mediated transport endosomal transport vesicle-mediated transport to the plasma membrane positive regulation of transport regulation of cellular localization organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly plasma membrane tubulation membrane organization plasma membrane organization endomembrane system organization actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization actin filament-based process cytoskeleton organization positive regulation of cellular component organization regulation of cellular component organization regulation of syncytium formation by plasma membrane fusion cellular developmental process cell-cell fusion muscle cell differentiation myotube differentiation muscle structure development cell differentiation anatomical structure development positive regulation of myoblast fusion developmental process myoblast fusion syncytium formation by cell-cell fusion regulation of myoblast fusion positive regulation of syncytium formation by plasma membrane fusion striated muscle cell differentiation animal gross anatomical part developmental process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane microdomain cell periphery membrane raft plasma membrane raft plasma membrane plasma membrane region caveola membrane-bounded organelle intracellular vesicle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane microdomain cell periphery membrane raft plasma membrane raft plasma membrane plasma membrane region caveola membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle early endosome endosome endomembrane system endosome membrane recycling endosome cytoplasmic vesicle membrane bounding membrane of organelle recycling endosome membrane vesicle membrane organelle membrane perinuclear region of cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000261	EH domain	Domain
A, B, C, D	IPR045063	Dynamin, N-terminal	Domain
A, B, C, D	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A, B, C, D	IPR040990	Domain of unknown function DUF5600	Domain
A, B, C, D	IPR002048	EF-hand domain	Domain
A, B, C, D	IPR011992	EF-hand domain pair	Homologous Superfamily
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, B, C, D	IPR031692	EH domain-containing protein, N-terminal	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9RBU | pdb_00009rbu

Cryo-ET structure of full-length membrane-bound EHD2 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage