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9B8U
Crystal structure of CRX-Ret4 oligonucleotide complex
External Resource: Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
,
B
,
C
,
D
PF00046
Homeodomain (Homeodomain)
Homeodomain
-
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
,
B
,
C
,
D
Cone-rod homeobox protein
DNA-binding transcription factor activity, RNA polymerase II-specific
transcription regulator activity
DNA-binding transcription factor activity
transcription factor binding
RNA polymerase II-specific DNA-binding transcription factor binding
protein binding
binding
DNA-binding transcription factor binding
DNA binding
sequence-specific DNA binding
double-stranded DNA binding
nucleic acid binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
transcription regulator activity
DNA-binding transcription factor activity
transcription factor binding
RNA polymerase II-specific DNA-binding transcription factor binding
protein binding
binding
DNA-binding transcription factor binding
DNA binding
sequence-specific DNA binding
double-stranded DNA binding
nucleic acid binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
organic cyclic compound binding
transcription regulatory region nucleic acid binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
LRR domain binding
protein domain specific binding
leucine zipper domain binding
DNA-binding transcription activator activity
nuclear receptor binding
DNA-binding transcription activator activity, RNA polymerase II-specific
Less
developmental process
cellular developmental process
cell differentiation
cellular process
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
developmental process
cellular developmental process
cell differentiation
cellular process
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
biological regulation
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
metabolic process
regulation of macromolecule biosynthetic process
regulation of DNA-templated transcription
macromolecule metabolic process
regulation of metabolic process
anatomical structure morphogenesis
animal organ development
anatomical structure development
animal organ morphogenesis
multicellular organism development
multicellular organismal process
nervous system development
system development
sensory perception of light stimulus
system process
sensory perception
nervous system process
visual perception
transcription by RNA polymerase II
regulation of transcription by RNA polymerase II
positive regulation of DNA-templated transcription
positive regulation of biological process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of metabolic process
positive regulation of biosynthetic process
positive regulation of macromolecule metabolic process
positive regulation of cellular process
positive regulation of nucleobase-containing compound metabolic process
positive regulation of transcription by RNA polymerase II
positive regulation of RNA metabolic process
positive regulation of RNA biosynthetic process
positive regulation of cellular biosynthetic process
Less
RNA polymerase II transcription regulator complex
membrane-bounded organelle
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
transcription regulator complex
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
chromatin
chromosome
RNA polymerase II transcription regulator complex
membrane-bounded organelle
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
transcription regulator complex
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
chromatin
chromosome
non-membrane-bounded organelle
Less
E
,
G
DNA (5'-D(P*CP*AP*GP*GP*AP*GP*CP*TP*TP*AP*GP*GP*AP*GP*GP*GP*GP*GP*AP*G)-3')
-
-
-
F
,
H
DNA (5'-D(P*CP*TP*CP*CP*CP*CP*CP*TP*CP*CP*TP*AP*AP*GP*CP*TP*CP*CP*TP*G)-3')
-
-
-
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
,
B
,
C
,
D
IPR009057
Homedomain-like superfamily
Homologous Superfamily
A
,
B
,
C
,
D
IPR017970
Homeobox, conserved site
Conserved Site
A
,
B
,
C
,
D
IPR013851
Transcription factor Otx, C-terminal
Domain
A
,
B
,
C
,
D
IPR001356
Homeodomain
Domain
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
A
,
B
,
C
,
D
Pharos
: 
O43186
retinitis pigmentosa
Leber congenital amaurosis
retinal degeneration
Leber congenital amaurosis 7
cone-rod dystrophy
cone-rod dystrophy 2
benign concentric annular macular dystrophy
inherited retinal dystrophy
blindness (disorder)
Congenital Amaurosis of Retinal Origin
intellectual disability
gallbladder disease
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