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9B1E
Cryo-EM structure of native SWR1 bound to nucleosome (composite structure)
External Resource: Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Helicase SWR1
-
-
-
B
Vacuolar protein sorting-associated protein 72
catalytic activity, acting on a protein
catalytic activity, acting on a nucleic acid
histone chaperone activity
ATP-dependent activity
ATP-dependent activity, acting on DNA
ATP-dependent chromatin remodeler activity
catalytic activity, acting on DNA
protein carrier chaperone
ATP-dependent histone chaperone activity
ATP-dependent H2AZ histone chaperone activity
catalytic activity
molecular carrier activity
protein binding
binding
catalytic activity, acting on a protein
catalytic activity, acting on a nucleic acid
histone chaperone activity
ATP-dependent activity
ATP-dependent activity, acting on DNA
ATP-dependent chromatin remodeler activity
catalytic activity, acting on DNA
protein carrier chaperone
ATP-dependent histone chaperone activity
ATP-dependent H2AZ histone chaperone activity
catalytic activity
molecular carrier activity
protein binding
binding
histone binding
Less
regulation of cellular process
cellular biosynthetic process
positive regulation of biological process
RNA metabolic process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of gene expression, epigenetic
cellular component organization
RNA biosynthetic process
nucleobase-containing compound metabolic process
positive regulation of metabolic process
DNA-templated transcription
nucleic acid biosynthetic process
transcription by RNA polymerase II
positive regulation of biosynthetic process
regulation of cellular process
cellular biosynthetic process
positive regulation of biological process
RNA metabolic process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of gene expression, epigenetic
cellular component organization
RNA biosynthetic process
nucleobase-containing compound metabolic process
positive regulation of metabolic process
DNA-templated transcription
nucleic acid biosynthetic process
transcription by RNA polymerase II
positive regulation of biosynthetic process
chromatin organization
chromatin remodeling
positive regulation of macromolecule metabolic process
cellular component organization or biogenesis
positive regulation of cellular process
transcription initiation at RNA polymerase II promoter
regulation of biosynthetic process
regulation of biological process
epigenetic regulation of gene expression
cellular metabolic process
biological regulation
regulation of cellular metabolic process
primary metabolic process
regulation of macromolecule metabolic process
gene expression
nucleobase-containing compound biosynthetic process
macromolecule biosynthetic process
nucleic acid metabolic process
DNA-templated transcription initiation
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
positive regulation of gene expression
transcription initiation-coupled chromatin remodeling
regulation of macromolecule biosynthetic process
metabolic process
cellular process
macromolecule metabolic process
regulation of metabolic process
positive regulation of cellular biosynthetic process
regulation of primary metabolic process
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of DNA-templated transcription
Less
intracellular anatomical structure
cytoplasm
cellular anatomical entity
membrane-bounded organelle
ATPase complex
protein-containing complex
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
chromosome
intracellular organelle lumen
histone deacetylase complex
intracellular organelle
intracellular anatomical structure
cytoplasm
cellular anatomical entity
membrane-bounded organelle
ATPase complex
protein-containing complex
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
chromosome
intracellular organelle lumen
histone deacetylase complex
intracellular organelle
nucleoplasm
SWI/SNF superfamily-type complex
non-membrane-bounded organelle
INO80-type complex
catalytic complex
chromatin
intracellular membrane-bounded organelle
Swr1 complex
organelle lumen
organelle
intracellular non-membrane-bounded organelle
nuclear lumen
Less
C
Actin-like protein ARP6
protein-containing complex binding
chromatin binding
binding
nucleosome binding
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
biological regulation
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
metabolic process
regulation of macromolecule biosynthetic process
cellular process
regulation of DNA-templated transcription
macromolecule metabolic process
regulation of metabolic process
cellular component organization
chromatin organization
chromatin remodeling
cellular component organization or biogenesis
Less
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
organelle lumen
organelle
nuclear periphery
nuclear lumen
cytoplasm
ATPase complex
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
organelle lumen
organelle
nuclear periphery
nuclear lumen
cytoplasm
ATPase complex
protein-containing complex
nuclear protein-containing complex
nuclear chromosome
chromosome
histone deacetylase complex
nucleoplasm
SWI/SNF superfamily-type complex
non-membrane-bounded organelle
INO80-type complex
catalytic complex
chromatin
Swr1 complex
intracellular non-membrane-bounded organelle
Less
D
Vacuolar protein sorting-associated protein 71
cation binding
ion binding
binding
metal ion binding
small molecule binding
protein-containing complex binding
chromatin binding
nucleosome binding
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
biological regulation
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
metabolic process
regulation of macromolecule biosynthetic process
cellular process
regulation of DNA-templated transcription
macromolecule metabolic process
regulation of metabolic process
protein localization
establishment of protein localization
cellular localization
nitrogen compound transport
transport
protein targeting
establishment of protein localization to vacuole
protein localization to vacuole
intracellular transport
establishment of localization
localization
establishment of protein localization to organelle
protein transport
cellular macromolecule localization
macromolecule localization
protein localization to organelle
establishment of localization in cell
vacuolar transport
protein targeting to vacuole
intracellular protein transport
cellular component organization
chromatin organization
chromatin remodeling
cellular component organization or biogenesis
Less
membrane-bounded organelle
ATPase complex
protein-containing complex
intracellular anatomical structure
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
chromosome
intracellular organelle lumen
histone deacetylase complex
intracellular organelle
nucleoplasm
SWI/SNF superfamily-type complex
membrane-bounded organelle
ATPase complex
protein-containing complex
intracellular anatomical structure
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
chromosome
intracellular organelle lumen
histone deacetylase complex
intracellular organelle
nucleoplasm
SWI/SNF superfamily-type complex
non-membrane-bounded organelle
INO80-type complex
catalytic complex
chromatin
intracellular membrane-bounded organelle
cellular anatomical entity
Swr1 complex
organelle lumen
organelle
intracellular non-membrane-bounded organelle
nuclear lumen
Less
E
,
G
,
I
RuvB-like protein 1
-
-
-
F
,
H
,
J
RuvB-like protein 2
ATP-dependent activity, acting on DNA
DNA helicase activity
catalytic activity, acting on DNA
5'-3' DNA helicase activity
catalytic activity, acting on a nucleic acid
helicase activity
catalytic activity
ATP-dependent activity
binding
adenyl ribonucleotide binding
nucleotide binding
purine ribonucleotide binding
purine ribonucleoside triphosphate binding
nucleoside phosphate binding
ATP-dependent activity, acting on DNA
DNA helicase activity
catalytic activity, acting on DNA
5'-3' DNA helicase activity
catalytic activity, acting on a nucleic acid
helicase activity
catalytic activity
ATP-dependent activity
binding
adenyl ribonucleotide binding
nucleotide binding
purine ribonucleotide binding
purine ribonucleoside triphosphate binding
nucleoside phosphate binding
ion binding
purine nucleotide binding
organic cyclic compound binding
anion binding
adenyl nucleotide binding
ATP binding
heterocyclic compound binding
carbohydrate derivative binding
ribonucleotide binding
small molecule binding
pyrophosphatase activity
ATP hydrolysis activity
ribonucleoside triphosphate phosphatase activity
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
hydrolase activity
hydrolase activity, acting on acid anhydrides
3'-5' DNA helicase activity
Less
regulation of protein stability
biological regulation
regulation of biological quality
protein stabilization
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of protein stability
biological regulation
regulation of biological quality
protein stabilization
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
metabolic process
regulation of macromolecule biosynthetic process
cellular process
regulation of DNA-templated transcription
macromolecule metabolic process
regulation of metabolic process
ribonucleoprotein complex biogenesis
protein-containing complex organization
small nucleolar ribonucleoprotein complex assembly
protein-RNA complex assembly
cellular component organization
cellular component biogenesis
protein-RNA complex organization
cellular component assembly
protein-containing complex assembly
cellular component organization or biogenesis
box C/D snoRNP assembly
cellular response to stimulus
response to stimulus
DNA metabolic process
cellular response to stress
DNA damage response
response to stress
DNA repair
transcription by RNA polymerase II
regulation of transcription by RNA polymerase II
rRNA processing
ribosome biogenesis
RNA processing
rRNA metabolic process
chromatin organization
chromatin remodeling
Less
membrane-bounded organelle
ATPase complex
protein-containing complex
intracellular anatomical structure
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
chromosome
intracellular organelle lumen
intracellular organelle
SWI/SNF superfamily-type complex
non-membrane-bounded organelle
INO80-type complex
membrane-bounded organelle
ATPase complex
protein-containing complex
intracellular anatomical structure
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
chromosome
intracellular organelle lumen
intracellular organelle
SWI/SNF superfamily-type complex
non-membrane-bounded organelle
INO80-type complex
catalytic complex
chromatin
intracellular membrane-bounded organelle
cellular anatomical entity
Ino80 complex
organelle lumen
organelle
intracellular non-membrane-bounded organelle
nuclear lumen
NuA4 histone acetyltransferase complex
transferase complex
H4/H2A histone acetyltransferase complex
histone acetyltransferase complex
acetyltransferase complex
H4 histone acetyltransferase complex
protein acetyltransferase complex
intracellular protein-containing complex
histone deacetylase complex
nucleoplasm
Swr1 complex
R2TP complex
Less
K
SWR1-complex protein 3
catalytic activity, acting on a protein
catalytic activity, acting on a nucleic acid
histone chaperone activity
ATP-dependent activity
ATP-dependent activity, acting on DNA
ATP-dependent chromatin remodeler activity
catalytic activity, acting on DNA
protein carrier chaperone
ATP-dependent histone chaperone activity
ATP-dependent H2AZ histone chaperone activity
catalytic activity
molecular carrier activity
cellular component organization
organelle organization
cellular process
cellular component organization or biogenesis
endoplasmic reticulum organization
endomembrane system organization
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
cellular component organization
organelle organization
cellular process
cellular component organization or biogenesis
endoplasmic reticulum organization
endomembrane system organization
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
biological regulation
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
metabolic process
regulation of macromolecule biosynthetic process
regulation of DNA-templated transcription
macromolecule metabolic process
regulation of metabolic process
chromatin organization
chromatin remodeling
Less
membrane-bounded organelle
intracellular organelle
intracellular anatomical structure
mitochondrion
organelle
cytoplasm
cellular anatomical entity
intracellular membrane-bounded organelle
ATPase complex
protein-containing complex
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
membrane-bounded organelle
intracellular organelle
intracellular anatomical structure
mitochondrion
organelle
cytoplasm
cellular anatomical entity
intracellular membrane-bounded organelle
ATPase complex
protein-containing complex
nucleus
membrane-enclosed lumen
nuclear protein-containing complex
nuclear chromosome
chromosome
intracellular organelle lumen
histone deacetylase complex
nucleoplasm
SWI/SNF superfamily-type complex
non-membrane-bounded organelle
INO80-type complex
catalytic complex
chromatin
Swr1 complex
organelle lumen
intracellular non-membrane-bounded organelle
nuclear lumen
Less
L [auth Q]
,
N [auth S]
Histone H2A
-
-
-
M [auth R]
,
O [auth T]
Histone H2B
-
-
-
P [auth U]
,
R [auth W]
Histone H3
DNA binding
protein-containing complex binding
binding
chromatin binding
organic cyclic compound binding
nucleic acid binding
nucleosome binding
nucleosomal DNA binding
chromatin DNA binding
protein heterodimerization activity
protein binding
protein dimerization activity
structural molecule activity
structural constituent of chromatin
protein-containing complex organization
protein-DNA complex assembly
cellular component organization
protein-DNA complex organization
cellular component biogenesis
cellular component assembly
chromatin organization
protein-containing complex assembly
chromatin remodeling
cellular process
cellular component organization or biogenesis
nucleosome assembly
nucleosome organization
intracellular organelle
intracellular anatomical structure
organelle
intracellular non-membrane-bounded organelle
polytene chromosome
chromosome
cellular anatomical entity
non-membrane-bounded organelle
membrane-bounded organelle
protein-containing complex
nucleus
nuclear protein-containing complex
intracellular membrane-bounded organelle
RCAF complex
intracellular organelle
intracellular anatomical structure
organelle
intracellular non-membrane-bounded organelle
polytene chromosome
chromosome
cellular anatomical entity
non-membrane-bounded organelle
membrane-bounded organelle
protein-containing complex
nucleus
nuclear protein-containing complex
intracellular membrane-bounded organelle
RCAF complex
protein-DNA complex
nucleosome
chromatin
Less
Q [auth V]
,
S [auth X]
Histone H4
DNA binding
binding
organic cyclic compound binding
nucleic acid binding
protein heterodimerization activity
protein binding
protein dimerization activity
structural molecule activity
structural constituent of chromatin
cellular component organization
chromatin organization
cellular process
cellular component organization or biogenesis
protein-containing complex
intracellular anatomical structure
protein-DNA complex
nucleosome
chromatin
chromosome
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
intracellular membrane-bounded organelle
T [auth Y]
DNA (214-MER)
-
-
-
U [auth Z]
DNA (214-MER)
-
-
-
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
B
IPR013272
Vps72/YL1, C-terminal
Domain
B
IPR008895
Vps72/YL1
Unknown
B
IPR046757
Vps72/YL1, N-terminal
Domain
C
IPR043129
ATPase, nucleotide binding domain
Homologous Superfamily
C
IPR004000
Actin family
Family
D
IPR039723
Vps71/ZNHIT1
Family
D
IPR007529
Zinc finger, HIT-type
Domain
F
,
H
,
J
IPR041048
RuvB-like, AAA-lid domain
Domain
F
,
H
,
J
IPR042487
RuvBL1/2, DNA/RNA binding domain
Homologous Superfamily
F
,
H
,
J
IPR027238
RuvB-like
Family
F
,
H
,
J
IPR010339
TIP49, P-loop domain
Domain
F
,
H
,
J
IPR003593
AAA+ ATPase domain
Domain
F
,
H
,
J
IPR027417
P-loop containing nucleoside triphosphate hydrolase
Homologous Superfamily
K
IPR037651
SWR1-complex protein 3
Family
P [auth U]
,
R [auth W]
IPR009072
Histone-fold
Homologous Superfamily
P [auth U]
,
R [auth W]
IPR007125
Histone H2A/H2B/H3
Domain
P [auth U]
,
R [auth W]
IPR000164
Histone H3/CENP-A
Family
Q [auth V]
,
S [auth X]
IPR009072
Histone-fold
Homologous Superfamily
Q [auth V]
,
S [auth X]
IPR001951
Histone H4
Family
Q [auth V]
,
S [auth X]
IPR035425
CENP-T/Histone H4, histone fold
Domain
Q [auth V]
,
S [auth X]
IPR019809
Histone H4, conserved site
Conserved Site
Q [auth V]
,
S [auth X]
IPR004823
TATA box binding protein associated factor (TAF), histone-like fold domain
Domain
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