8JSI

Cryo-EM structure of a DNA-protein complex

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D [auth B]		PF22476Argonaute, N-terminal domain (Ago_N_3)Argonaute, N-terminal domainThis domain is found at the N-terminal end of Protein argonaute from Pyrococcus furiosus (Ago), a component of the RNAi effector complex (RISC). Ago is organised into four domains: N (this entry), PAZ (Pfam:PF12212), middle and PIWI (Pfam:PF02171). T ...This domain is found at the N-terminal end of Protein argonaute from Pyrococcus furiosus (Ago), a component of the RNAi effector complex (RISC). Ago is organised into four domains: N (this entry), PAZ (Pfam:PF12212), middle and PIWI (Pfam:PF02171). This domain shows a small four-stranded beta-sheet, three alpha-helices and a beta-hairpin [1].
Domain
A,
D [auth B]		PF02171Piwi domain (Piwi)Piwi domain- Family
A,
D [auth B]		PF12212PAZ domain (PAZ_2)PAZ domainThis entry corresponds to the PAZ domain found in some archaeal argonaute proteins [1]. It is an siRNA binding domain.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth B]		Argonaute family protein - -
B [auth T],
E [auth U]		DNA (5'-D(P*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*C)-3')---
C [auth G],
F [auth H]		DNA (5'-D(P*GP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
D [auth B]		IPR021103Argonaute PAZ domain, archaeaDomain
A,
D [auth B]		IPR036397Ribonuclease H superfamilyHomologous Superfamily
A,
D [auth B]		IPR036085PAZ domain superfamilyHomologous Superfamily
A,
D [auth B]		IPR003165Piwi domainDomain
A,
D [auth B]		IPR003100PAZ domainDomain
A,
D [auth B]		IPR012337Ribonuclease H-like superfamilyHomologous Superfamily