8WQL | pdb_00008wql

In situ PBS-PSII supercomplex from cyanobacterial Spirulina platensis


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
R [auth BD]McsB_Ce8wqlBD02 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
U [auth ED]McsB_Ce8wqlED01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
V [auth FD]McsB_Ce8wqlFD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
Y [auth JD]McsB_Ce8wqlJD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
GA [auth TD]McsB_Ce8wqlTD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
JA [auth XD]McsB_Ce8wqlXD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
T [auth DD]McsB_Ce8wqlDD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
Q [auth AD]McsB_Ce8wqlAD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
J [auth UB]McsB_Ce8wqlUB01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
E [auth PB]McsB_Ce8wqlPB01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
JF [auth c2]McsB_Ce8wqlc201 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
IF [auth b2]McsB_Ce8wqlb201 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
JC [auth VG]McsB_Ce8wqlVG01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
D [auth OB]McsB_Ce8wqlOB01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
EC [auth QG]McsB_Ce8wqlQG01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
LA [auth ZD]McsB_Ce8wqlZD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
KA [auth YD]McsB_Ce8wqlYD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
IA [auth VD]McsB_Ce8wqlVD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
HA [auth UD]McsB_Ce8wqlUD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
DA [auth QD]McsB_Ce8wqlQD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
CA [auth OD]McsB_Ce8wqlOD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
BA [auth MD]McsB_Ce8wqlMD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
AA [auth LD]McsB_Ce8wqlLD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
Z [auth KD]McsB_Ce8wqlKD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
X [auth ID]McsB_Ce8wqlID01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
W [auth HD]McsB_Ce8wqlHD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)
A [auth BA]McsB_Ce8wqlBA01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: McsB_CECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem II CP47 reaction center protein---
Photosystem II CP43 reaction center protein---
Cytochrome b559 subunit alpha---
Cytochrome b559 subunit beta---
Photosystem II reaction center protein J---
Photosystem II reaction center protein T---
Photosystem II reaction center protein X---
IB [auth EF],
OC [auth EK],
TB [auth BG],
ZC [auth BL]
LPP2---
Photosystem II D2 protein---
Photosystem II protein D1---
Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core---
Allophycocyanin beta chain---
Phycocyanin beta subunit-
C-phycocyanin alpha subunit---
JC [auth VG],
MN [auth mF],
PD [auth VL],
TP [auth mK]
Allophycocyanin-B alpha subunit---
Allophycocyanin alpha chain---
EC [auth QG],
GN [auth gF],
KD [auth QL],
NP [auth gK]
Allophycocyanin beta-18 subunit---
Photosystem II reaction center protein Z---
Photosystem II reaction center protein Psb30---
Photosystem II extrinsic protein V---
PsbU---
BB [auth SE],
BF [auth S1],
FA [auth SD]
LPP1---
Photosystem II reaction center protein Y---
B [auth BB],
C [auth CB],
EH [auth B4],
FH [auth C4]
LCM---
PsbQ protein---
Photosystem II extrinsic protein O---
Photosystem II reaction center protein M---
Photosystem II reaction center protein L---
Photosystem II reaction center protein K---
Photosystem II reaction center protein I---
Photosystem II reaction center protein H---
LRC1---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
IPR006247Phycocyanin, beta subunitFamily
IPR009050Globin-like superfamilyHomologous Superfamily
IPR012128Phycobilisome, alpha/beta subunitFamily