8WA1

The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
T [auth a]
DNA-directed RNA polymerase subunit alpha
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14-like isoform X2
PAP8(pTAC6)- -
superoxide dismutase -
M,
W [auth m]
Thioredoxin-like protein CITRX1, chloroplastic
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1-
PAP13(pTAC18)- - -
DNA (24-mer)---
DNA (24-mer)---
RNA (27-mer)---
DNA-directed RNA polymerase subunit beta
U [auth c]DNA-directed RNA polymerase subunit beta''
V [auth i]Fructokinase-like 2, chloroplastic-
DNA-directed RNA polymerase subunit gamma
PAP1(pTAC3)---
Pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like-
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like -
superoxide dismutase -
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like-
Fructokinase-like 1, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
T [auth a]
IPR011773DNA-directed RNA polymerase, alpha subunitFamily
A,
T [auth a]
IPR011262DNA-directed RNA polymerase, insert domainDomain
A,
T [auth a]
IPR011260RNA polymerase, alpha subunit, C-terminalDomain
A,
T [auth a]
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
A,
T [auth a]
IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
A,
T [auth a]
IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
IPR036464Rubisco LSMT, substrate-binding domain superfamilyHomologous Superfamily
IPR046341SET domain superfamilyHomologous Superfamily
IPR015353Rubisco LSMT, substrate-binding domainDomain
IPR001214SET domainDomain
IPR044710PLASTID TRANSCRIPTIONALLY ACTIVE protein 6Family
IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilyHomologous Superfamily
IPR001189Manganese/iron superoxide dismutaseFamily
IPR019833Manganese/iron superoxide dismutase, binding siteBinding Site
IPR019832Manganese/iron superoxide dismutase, C-terminalDomain
IPR019831Manganese/iron superoxide dismutase, N-terminalDomain
IPR036314Manganese/iron superoxide dismutase, C-terminal domain superfamilyHomologous Superfamily
M,
W [auth m]
IPR044182Thioredoxin-like protein CITRX, chloroplasticFamily
M,
W [auth m]
IPR013766Thioredoxin domainDomain
M,
W [auth m]
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
IPR004101Mur ligase, C-terminalDomain
IPR035911MurE/MurF, N-terminalHomologous Superfamily
IPR036565Mur-like, catalytic domain superfamilyHomologous Superfamily
IPR000713Mur ligase, N-terminal catalytic domainDomain
IPR036615Mur ligase, C-terminal domain superfamilyHomologous Superfamily
IPR013221Mur ligase, centralDomain
IPR005761UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligaseFamily
IPR038958Protein plastid transcriptionally active 7Family
IPR011051RmlC-like cupin domain superfamilyHomologous Superfamily
IPR008579(S)-ureidoglycine aminohydrolase, cupin domainDomain
IPR014710RmlC-like jelly roll foldHomologous Superfamily
IPR007642RNA polymerase Rpb2, domain 2Domain
IPR015712DNA-directed RNA polymerase, subunit 2Family
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
IPR042107DNA-directed RNA polymerase, beta subunit, external 1 domain superfamilyHomologous Superfamily
IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
IPR007645RNA polymerase Rpb2, domain 3Domain
IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
IPR010243DNA-directed RNA polymerase beta subunit, bacterial-typeFamily
IPR007641RNA polymerase Rpb2, domain 7Domain
U [auth c]IPR007081RNA polymerase Rpb1, domain 5Domain
U [auth c]IPR007083RNA polymerase Rpb1, domain 4Domain
U [auth c]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
U [auth c]IPR012756DNA-directed RNA polymerase, subunit beta''Family
U [auth c]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
V [auth i]IPR011611Carbohydrate kinase PfkBDomain
V [auth i]IPR029056Ribokinase-likeHomologous Superfamily
IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
IPR034678DNA-directed RNA polymerase subunit RpoC1Family
IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
IPR000722RNA polymerase, alpha subunitDomain
IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
IPR006592RNA polymerase, N-terminalDomain
IPR007080RNA polymerase Rpb1, domain 1Domain
IPR002625Smr domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR002885Pentatricopeptide repeatRepeat
IPR033443PROP1-like, PPR domainDomain
IPR003029S1 domainDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR044967Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10Family
IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilyHomologous Superfamily
IPR001189Manganese/iron superoxide dismutaseFamily
IPR019833Manganese/iron superoxide dismutase, binding siteBinding Site
IPR019832Manganese/iron superoxide dismutase, C-terminalDomain
IPR019831Manganese/iron superoxide dismutase, N-terminalDomain
IPR036314Manganese/iron superoxide dismutase, C-terminal domain superfamilyHomologous Superfamily
IPR034581Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12Family
IPR011611Carbohydrate kinase PfkBDomain
IPR002173Carbohydrate/purine kinase, PfkB, conserved siteConserved Site
IPR029056Ribokinase-likeHomologous Superfamily