Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilySARS coronavirus receptor-binding domain-like 8092653 3001706 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09408Betacoronavirus spike glycoprotein S1, receptor binding (bCoV_S1_RBD)Betacoronavirus spike glycoprotein S1, receptor bindingThis entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is transla ...This entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is translated as a large polypeptide that is subsequently cleaved to the distal S1, responsible for receptor binding, and the membrane-anchored S2 responsible for membrane fusion [1]. The coronavirus (SARS-CoV) S1 subunit is composed of two distinct domains: an N-terminal domain (S1 NTD) and a receptor-binding domain (S1 RBD) also referred to as the S1 CTD or domain B. Each of these domains have been implicated in binding to host receptors. However, most coronaviruses are not known to utilise both the S1 NTD and S1 RBD for viral entry [2]. SARS-CoV makes use of its S1 RBD to bind to the human angiotensin-converting enzyme 2 (ACE2) as its host receptor [3,4].
Domain
PF15494Scavenger receptor cysteine-rich domain (SRCR_2)Scavenger receptor cysteine-rich domainSRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.Domain
PF00089Trypsin (Trypsin)Trypsin- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Spike protein S1-
Transmembrane protease serine 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018548Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirusDomain
IPR032500Spike glycoprotein S1, N-terminal domain, betacoronavirus-likeDomain
IPR042578Spike glycoprotein, betacoronavirusFamily
IPR036326Spike S1 subunit, receptor binding domain superfamily, betacoronavirusHomologous Superfamily
IPR043002Spike glycoprotein, N-terminal domain superfamilyHomologous Superfamily
IPR044339Spike (S) protein S1 subunit, N-terminal domain, murine hepatitis virus-likeDomain
IPR044874Spike glycoprotein S2, coronavirus, heptad repeat 2Domain
IPR043614Spike glycoprotein S2, coronavirus, C-terminalDomain
IPR044873Spike glycoprotein S2, coronavirus, heptad repeat 1Domain
IPR043473Spike glycoprotein S2 superfamily, coronavirusHomologous Superfamily
IPR043607Coronavirus spike glycoprotein S1, C-terminalDomain
IPR002552Spike glycoprotein S2, coronavirusDomain
IPR017448SRCR-like domainDomain
IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR001190SRCR domainDomain
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR036772SRCR-like domain superfamilyHomologous Superfamily
IPR001254Serine proteases, trypsin domainDomain
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
IPR036055LDL receptor-like superfamilyHomologous Superfamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR018114Serine proteases, trypsin family, histidine active siteActive Site