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8PP0
Crystal structure of Retinoic Acid Receptor alpha (RXRA) in complexed with JP147
External Resource: Annotation
Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Domain Annotation: SCOP2 Classification
SCOP2 Database Homepage
Chains
Type
Family Name
Domain Identifier
Family Identifier
Provenance Source (Version)
A
SCOP2B Superfamily
Nuclear receptor ligand-binding domain
8038695
3001442
SCOP2B (2022-06-29)
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Retinoic acid receptor RXR-alpha
DNA binding
sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
binding
double-stranded DNA binding
organic cyclic compound binding
nucleic acid binding
transcription regulatory region nucleic acid binding
transcription factor binding
transcription coregulator binding
protein binding
DNA-binding transcription factor activity, RNA polymerase II-specific
transcription regulator activity
DNA binding
sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
binding
double-stranded DNA binding
organic cyclic compound binding
nucleic acid binding
transcription regulatory region nucleic acid binding
transcription factor binding
transcription coregulator binding
protein binding
DNA-binding transcription factor activity, RNA polymerase II-specific
transcription regulator activity
DNA-binding transcription factor activity
LBD domain binding
protein domain specific binding
nuclear receptor activity
molecular transducer activity
ligand-activated transcription factor activity
signaling receptor activity
retinoic acid binding
organic acid binding
isoprenoid binding
retinoid binding
ion binding
anion binding
lipid binding
carboxylic acid binding
monocarboxylic acid binding
small molecule binding
identical protein binding
RNA polymerase II-specific DNA-binding transcription factor binding
nuclear receptor binding
DNA-binding transcription factor binding
nuclear vitamin D receptor binding
retinoic acid-responsive element binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
nuclear steroid receptor activity
DNA binding domain binding
peptide binding
cation binding
transition metal ion binding
zinc ion binding
metal ion binding
enzyme binding
Less
positive regulation of cholesterol efflux
regulation of localization
transport
positive regulation of sterol transport
positive regulation of biological process
regulation of lipid transport
organic hydroxy compound transport
localization
regulation of cholesterol efflux
sterol transport
regulation of cholesterol transport
positive regulation of cholesterol transport
regulation of sterol transport
regulation of biological process
positive regulation of cholesterol efflux
regulation of localization
transport
positive regulation of sterol transport
positive regulation of biological process
regulation of lipid transport
organic hydroxy compound transport
localization
regulation of cholesterol efflux
sterol transport
regulation of cholesterol transport
positive regulation of cholesterol transport
regulation of sterol transport
regulation of biological process
regulation of transport
biological regulation
lipid localization
lipid transport
positive regulation of lipid localization
establishment of localization
positive regulation of lipid transport
positive regulation of transport
regulation of lipid localization
macromolecule localization
cholesterol transport
cholesterol efflux
regulation of transporter activity
positive regulation of molecular function
regulation of molecular function
positive regulation of transporter activity
multicellular organismal process
regulation of developmental process
regulation of biomineral tissue development
regulation of bone mineralization
positive regulation of ossification
positive regulation of developmental process
multicellular organism development
positive regulation of biomineral tissue development
ossification
anatomical structure development
biomineral tissue development
regulation of multicellular organismal process
developmental process
regulation of multicellular organismal development
bone mineralization
animal organ development
tissue development
positive regulation of bone mineralization
positive regulation of multicellular organismal process
regulation of ossification
cellular response to stimulus
regulation of cellular process
intracellular receptor signaling pathway
response to stimulus
signaling
response to endogenous stimulus
retinoic acid receptor signaling pathway
hormone-mediated signaling pathway
intracellular signal transduction
cell communication
cellular response to endogenous stimulus
cellular response to chemical stimulus
response to hormone
response to chemical
cellular process
signal transduction
nuclear receptor-mediated signaling pathway
cellular response to hormone stimulus
peroxisome proliferator activated receptor signaling pathway
mRNA transcription by RNA polymerase II
cellular biosynthetic process
cellular metabolic process
RNA metabolic process
primary metabolic process
nucleobase-containing compound biosynthetic process
gene expression
mRNA transcription
mRNA metabolic process
macromolecule biosynthetic process
nucleic acid metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
DNA-templated transcription
nucleic acid biosynthetic process
transcription by RNA polymerase II
biosynthetic process
metabolic process
macromolecule metabolic process
negative regulation of biological process
negative regulation of cellular metabolic process
regulation of primary metabolic process
negative regulation of RNA biosynthetic process
regulation of RNA metabolic process
negative regulation of cellular process
negative regulation of nucleobase-containing compound metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of transcription by RNA polymerase II
negative regulation of DNA-templated transcription
negative regulation of transcription by RNA polymerase II
negative regulation of metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
negative regulation of cellular biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
negative regulation of biosynthetic process
negative regulation of macromolecule biosynthetic process
regulation of macromolecule biosynthetic process
regulation of DNA-templated transcription
regulation of metabolic process
negative regulation of RNA metabolic process
positive regulation of DNA-templated transcription
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of metabolic process
positive regulation of biosynthetic process
positive regulation of macromolecule metabolic process
positive regulation of cellular process
positive regulation of nucleobase-containing compound metabolic process
positive regulation of transcription by RNA polymerase II
positive regulation of RNA metabolic process
positive regulation of RNA biosynthetic process
positive regulation of cellular biosynthetic process
positive regulation of cell communication
positive regulation of signal transduction
regulation of signal transduction
regulation of thyroid hormone receptor signaling pathway
positive regulation of response to stimulus
regulation of intracellular signal transduction
positive regulation of thyroid hormone receptor signaling pathway
regulation of signaling
thyroid hormone receptor signaling pathway
positive regulation of intracellular signal transduction
regulation of response to stimulus
regulation of cell communication
positive regulation of signaling
cellular developmental process
cell differentiation
response to retinoic acid
response to lipid
response to oxygen-containing compound
regulation of response to nutrient levels
cellular response to vitamin D
response to vitamin D
response to organic cyclic compound
cellular response to organic cyclic compound
cellular response to oxygen-containing compound
cellular response to nutrient levels
cellular response to lipid
regulation of vitamin D receptor signaling pathway
response to nutrient levels
response to vitamin
response to nutrient
vitamin D receptor signaling pathway
cellular response to vitamin
positive regulation of vitamin D receptor signaling pathway
cellular response to nutrient
Less
intracellular anatomical structure
cytoplasm
cellular anatomical entity
cytosol
protein-containing complex
transcription regulator complex
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
chromatin
chromosome
non-membrane-bounded organelle
receptor complex
membrane-bounded organelle
intracellular anatomical structure
cytoplasm
cellular anatomical entity
cytosol
protein-containing complex
transcription regulator complex
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
chromatin
chromosome
non-membrane-bounded organelle
receptor complex
membrane-bounded organelle
mitochondrion
intracellular membrane-bounded organelle
RNA polymerase II transcription regulator complex
nucleus
nuclear protein-containing complex
membrane-enclosed lumen
intracellular organelle lumen
nucleoplasm
organelle lumen
nuclear lumen
Less
B
Nuclear receptor coactivator 2
protein binding
binding
protein domain specific binding
DNA binding
sequence-specific DNA binding
double-stranded DNA binding
nucleic acid binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
organic cyclic compound binding
transcription regulatory region nucleic acid binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
protein binding
binding
protein domain specific binding
DNA binding
sequence-specific DNA binding
double-stranded DNA binding
nucleic acid binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
organic cyclic compound binding
transcription regulatory region nucleic acid binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
chromatin binding
transcription coactivator activity
transcription regulator activity
transcription coregulator activity
protein-macromolecule adaptor activity
molecular adaptor activity
transcription factor binding
RNA polymerase II-specific DNA-binding transcription factor binding
nuclear receptor binding
DNA-binding transcription factor binding
RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
intronic transcription regulatory region sequence-specific DNA binding
nuclear receptor coactivator activity
protein dimerization activity
signaling receptor binding
aryl hydrocarbon receptor binding
Less
regulation of biological process
regulation of lipid metabolic process
biological regulation
primary metabolic process
metabolic process
regulation of metabolic process
lipid metabolic process
regulation of primary metabolic process
developmental process
multicellular organismal process
regulation of developmental process
connective tissue development
adipose tissue development
positive regulation of adipose tissue development
regulation of biological process
regulation of lipid metabolic process
biological regulation
primary metabolic process
metabolic process
regulation of metabolic process
lipid metabolic process
regulation of primary metabolic process
developmental process
multicellular organismal process
regulation of developmental process
connective tissue development
adipose tissue development
positive regulation of adipose tissue development
animal organ development
positive regulation of biological process
tissue development
positive regulation of developmental process
regulation of adipose tissue development
anatomical structure development
positive regulation of multicellular organismal process
regulation of multicellular organismal process
response to ketone
response to lipid
response to stimulus
response to hormone
response to steroid hormone
response to chemical
response to endogenous stimulus
response to progesterone
response to oxygen-containing compound
response to organic cyclic compound
cellular response to stimulus
cellular response to endogenous stimulus
cellular response to chemical stimulus
cellular process
cellular response to hormone stimulus
regulation of biosynthetic process
rhythmic process
regulation of cellular process
circadian regulation of gene expression
cellular biosynthetic process
cellular metabolic process
circadian rhythm
regulation of cellular metabolic process
regulation of macromolecule metabolic process
gene expression
macromolecule biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
regulation of macromolecule biosynthetic process
macromolecule metabolic process
RNA metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
nucleobase-containing compound biosynthetic process
nucleic acid metabolic process
regulation of DNA-templated transcription
intracellular receptor signaling pathway
signaling
intracellular signal transduction
cell communication
peroxisome proliferator activated receptor signaling pathway
signal transduction
nuclear receptor-mediated signaling pathway
mRNA transcription by RNA polymerase II
mRNA transcription
mRNA metabolic process
transcription by RNA polymerase II
behavior
circadian behavior
locomotory behavior
rhythmic behavior
locomotor rhythm
response to Thyroglobulin triiodothyronine
cellular response to Thyroglobulin triiodothyronine
negative regulation of biological process
negative regulation of cellular metabolic process
negative regulation of RNA biosynthetic process
negative regulation of cellular process
negative regulation of nucleobase-containing compound metabolic process
negative regulation of macromolecule metabolic process
regulation of transcription by RNA polymerase II
negative regulation of DNA-templated transcription
negative regulation of transcription by RNA polymerase II
negative regulation of metabolic process
negative regulation of cellular biosynthetic process
negative regulation of biosynthetic process
negative regulation of macromolecule biosynthetic process
negative regulation of RNA metabolic process
cellular response to nitrogen compound
response to peptide hormone
cellular response to peptide hormone stimulus
response to nitrogen compound
regulation of cellular response to insulin stimulus
cellular response to oxygen-containing compound
regulation of response to stimulus
response to insulin
cellular response to insulin stimulus
positive regulation of DNA-templated transcription
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
positive regulation of metabolic process
positive regulation of biosynthetic process
positive regulation of macromolecule metabolic process
positive regulation of cellular process
positive regulation of nucleobase-containing compound metabolic process
positive regulation of transcription by RNA polymerase II
positive regulation of RNA metabolic process
positive regulation of RNA biosynthetic process
positive regulation of cellular biosynthetic process
monosaccharide metabolic process
carbohydrate metabolic process
hexose metabolic process
regulation of small molecule metabolic process
small molecule metabolic process
regulation of carbohydrate metabolic process
regulation of glucose metabolic process
glucose metabolic process
Less
RNA polymerase II transcription regulator complex
membrane-bounded organelle
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
transcription regulator complex
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle
organelle
cytoplasm
membrane-enclosed lumen
intracellular organelle lumen
RNA polymerase II transcription regulator complex
membrane-bounded organelle
protein-containing complex
intracellular anatomical structure
nucleus
nuclear protein-containing complex
transcription regulator complex
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle
organelle
cytoplasm
membrane-enclosed lumen
intracellular organelle lumen
nucleoplasm
organelle lumen
nuclear lumen
intracellular non-membrane-bounded organelle
chromatin
chromosome
non-membrane-bounded organelle
nuclear body
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR001628
Zinc finger, nuclear hormone receptor-type
Domain
A
IPR021780
Nuclear/hormone receptor activator site AF-1
Domain
A
IPR013088
Zinc finger, NHR/GATA-type
Homologous Superfamily
A
IPR000003
Retinoid X receptor/HNF4
Family
A
IPR050274
Nuclear hormone receptor family NR2 subfamily
Family
A
IPR001723
Nuclear hormone receptor
Family
A
IPR000536
Nuclear hormone receptor, ligand-binding domain
Domain
A
IPR035500
Nuclear hormone receptor-like domain superfamily
Homologous Superfamily
B
IPR010011
Nuclear receptor coactivator, DUF1518
Domain
B
IPR009110
Nuclear receptor coactivator, interlocking
Homologous Superfamily
B
IPR037077
Nuclear receptor coactivator, Ncoa-type, interlocking domain superfamily
Homologous Superfamily
B
IPR017426
Nuclear receptor coactivator
Family
B
IPR014935
Nuclear receptor coactivator, receptor-binding domain
Domain
B
IPR013767
PAS fold
Domain
B
IPR000014
PAS domain
Domain
B
IPR011598
Myc-type, basic helix-loop-helix (bHLH) domain
Domain
B
IPR014920
Nuclear receptor coactivator, Ncoa-type, interlocking
Domain
B
IPR035965
PAS domain superfamily
Homologous Superfamily
B
IPR028822
Nuclear receptor coactivator 2, basic helix-loop-helix
Domain
B
IPR032565
Nuclear receptor coactivator 2/3, DUF4927
Domain
B
IPR036638
Helix-loop-helix DNA-binding domain superfamily
Homologous Superfamily
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
A
Pharos
: 
P19793
prostate cancer
lesion of sciatic nerve
sciatic neuropathy
thyroid gland carcinoma
amyotrophic lateral sclerosis type 1
thyroid adenoma
malignant mesothelioma
Sciatic Neuritis
thyroid cancer
astrocytic tumor
invasive ductal breast carcinoma
MALT lymphoma
osteosarcoma
pituitary cancer
B-cell chronic lymphocytic leukemia
prostate cancer
lesion of sciatic nerve
sciatic neuropathy
thyroid gland carcinoma
amyotrophic lateral sclerosis type 1
thyroid adenoma
malignant mesothelioma
Sciatic Neuritis
thyroid cancer
astrocytic tumor
invasive ductal breast carcinoma
MALT lymphoma
osteosarcoma
pituitary cancer
B-cell chronic lymphocytic leukemia
lung carcinoma
medulloblastoma
ovarian cancer
primary cutaneous T-cell lymphoma
interstitial cystitis
large cell medulloblastoma
pancreatic ductal adenocarcinoma
Less
B
Pharos
: 
Q15596
breast carcinoma
prostate cancer
psoriasis
ulcerative colitis
adenoma
endometriosis
interstitial cystitis
Mammary Neoplasms
osteosarcoma
testicular cancer
atypical teratoid rhabdoid tumor
Crohn disease
Gaucher disease
large cell medulloblastoma
pancreatic intraductal papillary-mucinous neoplasm
breast carcinoma
prostate cancer
psoriasis
ulcerative colitis
adenoma
endometriosis
interstitial cystitis
Mammary Neoplasms
osteosarcoma
testicular cancer
atypical teratoid rhabdoid tumor
Crohn disease
Gaucher disease
large cell medulloblastoma
pancreatic intraductal papillary-mucinous neoplasm
testicular germ cell tumor
breast cancer
endogenous depression
glioblastoma
medulloblastoma
plasma cell myeloma
Less
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