8GVX
Cryo-EM structure of the human TRPC5 ion channel in complex with G alpha i3 subunits, class2
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth F] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | Galpha insert domain-like | 8056795 | 3000669 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Galpha insert domain-like | 8056795 | 3000669 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | Galpha insert domain-like | 8056795 | 3000669 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Galpha insert domain-like | 8056795 | 3000669 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056794 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | F_UNCLASSIFIED | e8gvxB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth B] | F_UNCLASSIFIED | e8gvxB2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth A] | F_UNCLASSIFIED | e8gvxA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth A] | F_UNCLASSIFIED | e8gvxA2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth C] | F_UNCLASSIFIED | e8gvxC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth C] | F_UNCLASSIFIED | e8gvxC2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth D] | F_UNCLASSIFIED | e8gvxD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth D] | F_UNCLASSIFIED | e8gvxD2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth F] | F_UNCLASSIFIED | e8gvxF1 | A: alpha arrays | X: Transducin (alpha subunit), insertion domain (From Topology) | H: Transducin (alpha subunit), insertion domain (From Topology) | T: Transducin (alpha subunit), insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth F] | F_UNCLASSIFIED | e8gvxF2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth E] | F_UNCLASSIFIED | e8gvxE1 | A: alpha arrays | X: Transducin (alpha subunit), insertion domain (From Topology) | H: Transducin (alpha subunit), insertion domain (From Topology) | T: Transducin (alpha subunit), insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth E] | F_UNCLASSIFIED | e8gvxE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth G] | F_UNCLASSIFIED | e8gvxG1 | A: alpha arrays | X: Transducin (alpha subunit), insertion domain (From Topology) | H: Transducin (alpha subunit), insertion domain (From Topology) | T: Transducin (alpha subunit), insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth G] | F_UNCLASSIFIED | e8gvxG2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth H] | F_UNCLASSIFIED | e8gvxH1 | A: alpha arrays | X: Transducin (alpha subunit), insertion domain (From Topology) | H: Transducin (alpha subunit), insertion domain (From Topology) | T: Transducin (alpha subunit), insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth H] | F_UNCLASSIFIED | e8gvxH2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], F [auth A], G [auth C], H [auth D] | PF08344 | Transient receptor ion channel II (TRP_2) | Transient receptor ion channel II | - | Family |
A [auth B], F [auth A], G [auth C], H [auth D] | PF12796 | Ankyrin repeats (3 copies) (Ank_2) | Ankyrin repeats (3 copies) | - | Repeat |
A [auth B], F [auth A], G [auth C], H [auth D] | PF00023 | Ankyrin repeat (Ank) | Ankyrin repeat | - | Repeat |
A [auth B], F [auth A], G [auth C], H [auth D] | PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Transient receptor potential channels |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Transient Receptor Potential (TRP) | TRPC5 ion channel in a nanodisc, class 1 |