8GTC

Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF10983Protein of unknown function (DUF2793) (DUF2793)Protein of unknown function (DUF2793)- Family
G, H, I, J, K
PF09343Conserved hypothetical protein 2217 (DUF2460) (DUF2460)Conserved hypothetical protein 2217 (DUF2460)- Family
M, N, O
PF13547GTA TIM-barrel-like domain (GTA_TIM)GTA TIM-barrel-like domainThis domain is found in the gene transfer agent protein. An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene trans ...This domain is found in the gene transfer agent protein. An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs [1]. The genes involved in this process appear to be found widely in bacteria [2]. According to the SUPERFAMILY database this domain has a TIM barrel fold.
Domain
M, N, O
PF13550Putative phage tail protein (Phage-tail_3)Putative phage tail proteinThis putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.Domain
P, Q, R
PF09356Phage conserved hypothetical protein BR0599 (Phage_BR0599)Phage conserved hypothetical protein BR0599- Family
P, Q, R
PF09931Uncharacterized conserved protein (DUF2163) (DUF2163)Uncharacterized conserved protein (DUF2163)- Family
PF10983Protein of unknown function (DUF2793) (DUF2793)Protein of unknown function (DUF2793)- Family