Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
USCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBromodomain 8084245 3001843 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyBromodomain 8084245 3001843 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyBromodomain 8084245 3001843 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyBromodomain 8084245 3001843 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyBromodomain 8084245 3001843 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyBromodomain 8084245 3001843 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E, I, M, Q
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
B, F, J, N, R
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
C, G, K, O, S
PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1].Domain
C, G, K, O, S
PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA.Domain
D, H, L, P, T
PF00439Bromodomain (Bromodomain)BromodomainBromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E, I, M, Q
Elongin-B
B, F, J, N, R
Elongin-C
C, G, K, O, S
von Hippel-Lindau disease tumor suppressor
D, H, L, P, T
Bromodomain-containing protein 4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E, I, M, Q
IPR000626Ubiquitin-like domainDomain
A, E, I, M, Q
IPR039049Elongin BFamily
A, E, I, M, Q
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
B, F, J, N, R
IPR016073SKP1 component, POZ domainDomain
B, F, J, N, R
IPR001232S-phase kinase-associated protein 1-likeFamily
B, F, J, N, R
IPR039948Elongin-CFamily
B, F, J, N, R
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
C, G, K, O, S
IPR037139von Hippel-Lindau disease tumour suppressor, alpha domain superfamilyHomologous Superfamily
C, G, K, O, S
IPR022772von Hippel-Lindau disease tumour suppressor, beta/alpha domainDomain
C, G, K, O, S
IPR024053von Hippel-Lindau disease tumour suppressor, beta domainDomain
C, G, K, O, S
IPR024048von Hippel-Lindau disease tumour suppressor, alpha domainDomain
C, G, K, O, S
IPR036208VHL superfamilyHomologous Superfamily
C, G, K, O, S
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyHomologous Superfamily
D, H, L, P, T
IPR043508Brdt, bromodomain, repeat IDomain
D, H, L, P, T
IPR027353NET domainDomain
D, H, L, P, T
IPR043509Brdt, bromodomain, repeat IIDomain
D, H, L, P, T
IPR018359Bromodomain, conserved siteConserved Site
D, H, L, P, T
IPR001487BromodomainDomain
D, H, L, P, T
IPR050935Bromodomain-containing chromatin readerFamily
D, H, L, P, T
IPR038336NET domain superfamilyHomologous Superfamily
D, H, L, P, T
IPR031354Bromodomain protein 4, C-terminalDomain
D, H, L, P, T
IPR036427Bromodomain-like superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E, I, M, Q
PharosQ15370
B, F, J, N, R
PharosQ15369
C, G, K, O, S
PharosP40337
D, H, L, P, T
PharosO60885