Cryo-EM structure of S. pombe Arp2/3 complex in the branch junction
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F | SCOP2B Superfamily | Arp2/3 complex subunits | 8085061 | 3000751 | SCOP2B (2022-06-29) |
| O [auth I] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| O [auth I] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| N [auth H] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| N [auth H] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| M [auth R] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| M [auth R] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| L [auth Q] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| L [auth Q] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| K [auth P] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| K [auth P] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| J [auth O] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| J [auth O] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| I [auth N] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| I [auth N] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| H [auth M] | SCOP2B Superfamily | Actin-like ATPases | 8043436 | 3000092 | SCOP2B (2022-06-29) |
| H [auth M] | SCOP2B Superfamily | Actin-like ATPases | 8043438 | 3000092 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | WD40 repeat-like | 8085897 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | MCM_OB | e8e9bA1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| B | MCM_OB | e8e9bB1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| D | MCM_OB | e8e9bD1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| E | MCM_OB | e8e9bE1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| F | MCM_OB | e8e9bF1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| O [auth I] | MCM_OB | e8e9bI1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| N [auth H] | MCM_OB | e8e9bH1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| M [auth R] | MCM_OB | e8e9bR1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| L [auth Q] | MCM_OB | e8e9bQ1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| K [auth P] | MCM_OB | e8e9bP1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| J [auth O] | MCM_OB | e8e9bO1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| I [auth N] | MCM_OB | e8e9bN1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| H [auth M] | MCM_OB | e8e9bM1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| G | MCM_OB | e8e9bG1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.90.640.10 | Alpha Beta | Alpha-Beta Complex | Actin | Chain A, domain 4 | CATH (utative) |
| B | 3.90.640.10 | Alpha Beta | Alpha-Beta Complex | Actin | Chain A, domain 4 | CATH (utative) |
| D | 3.30.1460.20 | Alpha Beta | 2-Layer Sandwich | Yope Regulator | Chain: A, | CATH (utative) |
| G | 1.25.40.190 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Actin-related protein 2/3 complex subunit 5 | CATH (utative) |
| C | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00022 | Actin (Actin) | Actin | - | Family | |
| PF04045 | Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc) | Arp2/3 complex, 34 kD subunit p34-Arc | - | Family | |
| PF05856 | ARP2/3 complex 20 kDa subunit (ARPC4) (ARPC4) | ARP2/3 complex 20 kDa subunit (ARPC4) | - | Family | |
| PF04699 | ARP2/3 complex 16 kDa subunit (p16-Arc) (P16-Arc) | ARP2/3 complex 16 kDa subunit (p16-Arc) | The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20 ... | Domain | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |














