Vigna radiata supercomplex I+III2 (full bridge)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| OB [auth V2] | SCOP2B Superfamily | Thioredoxin-like | 8096546 | 3000031 | SCOP2B (2022-06-29) |
| IB [auth S7] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8096548 | 3002291 | SCOP2B (2022-06-29) |
| FB [auth S4] | SCOP2B Superfamily | NADH-ubiquinone oxidoreductase-like | 8096550 | 3002258 | SCOP2B (2022-06-29) |
| CA [auth A2] | SCOP2B Superfamily | Thioredoxin-like | 8096544 | 3000031 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| S [auth V] | MCM_OB | e8e73V1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| I [auth J] | MCM_OB | e8e73J1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| R [auth T] | MCM_OB | e8e73T1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| H | MCM_OB | e8e73H1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| Q [auth S] | MCM_OB | e8e73S1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| G | MCM_OB | e8e73G1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| P [auth R] | MCM_OB | e8e73R1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| F | MCM_OB | e8e73F1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| OB [auth V2] | MCM_OB | e8e73V21 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| NB [auth V1] | MCM_OB | e8e73V11 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| JB [auth S8] | MCM_OB | e8e73S81 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| IB [auth S7] | MCM_OB | e8e73S71 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| HB [auth S6] | MCM_OB | e8e73S61 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| GB [auth S5] | MCM_OB | e8e73S51 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| O [auth Q] | MCM_OB | e8e73Q1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| E | MCM_OB | e8e73E1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| FB [auth S4] | MCM_OB | e8e73S41 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| EB [auth S3] | MCM_OB | e8e73S31 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| DB [auth S2] | MCM_OB | e8e73S21 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| CB [auth S1] | MCM_OB | e8e73S11 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| BB [auth L2] | MCM_OB | e8e73L21 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| WA [auth FD] | MCM_OB | e8e73FD1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| N [auth P] | MCM_OB | e8e73P2 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| D | MCM_OB | e8e73D2 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| TA [auth B9] | C1_4 | e8e73B901 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: C1_4 | ECOD (v294.2) |
| OA [auth B2] | MCM_OB | e8e73B21 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| NA [auth AB] | MCM_OB | e8e73AB1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| MA [auth AC] | MCM_OB | e8e73AC1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| M [auth O] | MCM_OB | e8e73O1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| C | MCM_OB | e8e73C1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| LA [auth AM] | MCM_OB | e8e73AM1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| KA [auth AL] | MCM_OB | e8e73AL1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| IA [auth A9] | MCM_OB | e8e73A91 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| HA [auth A8] | MCM_OB | e8e73A81 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| FA [auth A6] | MCM_OB | e8e73A61 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| CA [auth A2] | MCM_OB | e8e73A21 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| B | C1_4 | e8e73B01 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: C1_4 | ECOD (v294.2) |
| BA [auth A1] | MCM_OB | e8e73A11 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| AA [auth 6M] | C1_4 | e8e736M01 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: C1_4 | ECOD (v294.2) |
| Z [auth 5M] | C1_4 | e8e735M01 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: C1_4 | ECOD (v294.2) |
| Y [auth 4L] | MCM_OB | e8e734L1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| X [auth 4M] | MCM_OB | e8e734M1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| W [auth 3M] | C1_4 | e8e733M01 | A: beta barrels | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: C1_4 | ECOD (v294.2) |
| V [auth 2M] | MCM_OB | e8e732M1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
| U [auth 1M] | MCM_OB | e8e731M1 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MCM_OB | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth J], S [auth V] | PF05365 | Cytochrome b-c1 complex subunit 9 (UCR_UQCRX_QCR9) | Cytochrome b-c1 complex subunit 9 | - | Family |
| H, R [auth T] | PF02320 | Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge) | Ubiquinol-cytochrome C reductase hinge protein | The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ... | Domain |
| PB [auth X1] | PF10785 | NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit (NADH-u_ox-rdase) | NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit | This family is the N-terminal domain of NADH-ubiquinone oxidoreductase 21 kDa subunits from fungi, lower metazoa and plants. | Domain |
| OB [auth V2] | PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx) | Thioredoxin-like [2Fe-2S] ferredoxin | - | Family |
| NB [auth V1] | PF22461 | SLBB domain (SLBB_2) | SLBB domain | This entry represents a set of SLBB domains [5]. | Domain |
| NB [auth V1] | PF01512 | Nuo51 FMN-binding domain (Complex1_51K) | Nuo51 FMN-binding domain | This entry represents the FMN-binding domain of NADH-ubiquinone oxidoreductase 51kDa subunit from NADH:ubiquinone oxidoreductase. | Domain |
| NB [auth V1] | PF10589 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S) | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | Domain | |
| JB [auth S8] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| IB [auth S7] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | Domain | |
| HB [auth S6] | PF10276 | Zinc-finger domain (zf-CHCC) | Zinc-finger domain | This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C. | Domain |
| E, O [auth Q] | PF02921 | Ubiquinol cytochrome reductase transmembrane region (UCR_TM) | Ubiquinol cytochrome reductase transmembrane region | - | Family |
| FB [auth S4] | PF04800 | NADH dehydrogenase ubiquinone Fe-S protein 4 (NDUS4) | NADH dehydrogenase ubiquinone Fe-S protein 4 | - | Family |
| EB [auth S3] | PF00329 | Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa) | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | Domain | |
| DB [auth S2] | PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family |
| CB [auth S1] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | Domain | |
| CB [auth S1] | PF22151 | NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain (Fer4_NDSU1) | NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain | This entry represents the 4Fe-4S domain of NADH-ubiquinone oxidoreductase NDUFS1 from mammals and NuoG from bacteria, which are part of respiratory chain complex I [1-5]. | Domain |
| CB [auth S1] | PF22117 | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Fer4_Nqo3) | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain | NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ... | Domain |
| CB [auth S1] | PF09326 | NADH-ubiquinone oxidoreductase subunit G, C-terminal (NADH_dhqG_C) | NADH-ubiquinone oxidoreductase subunit G, C-terminal | - | Family |
| CB [auth S1] | PF13510 | 2Fe-2S iron-sulfur cluster binding domain (Fer2_4) | 2Fe-2S iron-sulfur cluster binding domain | The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Th ... | Domain |
| CB [auth S1] | PF10588 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3) | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | Domain | |
| AB [auth G2] | PF14602 | Hexapeptide repeat of succinyl-transferase (Hexapep_2) | Hexapeptide repeat of succinyl-transferase | - | Repeat |
| ZA [auth G1] | PF14602 | Hexapeptide repeat of succinyl-transferase (Hexapep_2) | Hexapeptide repeat of succinyl-transferase | - | Repeat |
| D, N [auth P] | PF02167 | Cytochrome C1 family (Cytochrom_C1) | Cytochrome C1 family | - | Family |
| TA [auth B9] | PF05347 | Complex 1 protein (LYR family) (Complex1_LYR) | Complex 1 protein (LYR family) | - | Family |
| RA [auth B7] | PF05676 | NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) (NDUF_B7) | NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) | - | Family |
| PA [auth B3] | PF08122 | NADH-ubiquinone oxidoreductase B12 subunit family (NDUF_B12) | NADH-ubiquinone oxidoreductase B12 subunit family | - | Family |
| NA [auth AB] | PF00550 | Phosphopantetheine attachment site (PP-binding) | Phosphopantetheine attachment site | A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ... | Domain |
| MA [auth AC] | PF00550 | Phosphopantetheine attachment site (PP-binding) | Phosphopantetheine attachment site | A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ... | Domain |
| C, M [auth O] | PF00032 | Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C) | Cytochrome b(C-terminal)/b6/petD | Domain | |
| C, M [auth O] | PF00033 | Cytochrome b/b6/petB (Cytochrome_B) | Cytochrome b/b6/petB | Domain | |
| LA [auth AM] | PF06212 | GRIM-19 protein (GRIM-19) | GRIM-19 protein | - | Family |
| KA [auth AL] | PF05071 | NADH ubiquinone oxidoreductase subunit NDUFA12 (NDUFA12) | NADH ubiquinone oxidoreductase subunit NDUFA12 | - | Family |
| JA [auth AK] | PF02466 | Tim17/Tim22/Tim23/Pmp24 family (Tim17) | Tim17/Tim22/Tim23/Pmp24 family | - | Family |
| IA [auth A9] | PF01370 | NAD dependent epimerase/dehydratase family (Epimerase) | NAD dependent epimerase/dehydratase family | - | Family |
| HA [auth A8] | PF06747 | CHCH domain (CHCH) | CHCH domain | we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ... | Domain |
| EA [auth A5] | PF04716 | ETC complex I subunit conserved region (ETC_C1_NDUFA5) | ETC complex I subunit conserved region | - | Family |
| CA [auth A2] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
| PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain | |
| PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family | |
| BA [auth A1] | PF15879 | NADH-ubiquinone oxidoreductase MWFE subunit (MWFE) | NADH-ubiquinone oxidoreductase MWFE subunit | - | Family |
| AA [auth 6M] | PF00499 | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3) | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 | - | Family |
| Z [auth 5M] | PF00361 | NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M) | NADH:quinone oxidoreductase/Mrp antiporter, TM | This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ... | Domain |
| Z [auth 5M] | PF00662 | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N) | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | This entry represents an amino terminal extension of Pfam:PF00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in ... | Domain |
| Y [auth 4L] | PF00420 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2) | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | - | Family |
| X [auth 4M] | PF00361 | NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M) | NADH:quinone oxidoreductase/Mrp antiporter, TM | This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ... | Domain |
| W [auth 3M] | PF00507 | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4) | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | - | Family |
| V [auth 2M] | PF00361 | NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M) | NADH:quinone oxidoreductase/Mrp antiporter, TM | This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ... | Domain |
| U [auth 1M] | PF00146 | NADH dehydrogenase (NADHdh) | NADH dehydrogenase | - | Family |
| L [auth N] | PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain |
| L [auth N] | PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |
| A, K [auth M] | PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain |
| A, K [auth M] | PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |














