7PUA

Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
LB [auth Fc]	SCOP2B Superfamily	ACP-like	8095575	3001805	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth CF]	Ribosomal_S6_1	e7puaCF1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: Ribosomal_S6_1	ECOD (1.6)
GB [auth FP]	ADP_ribosyl_GH	e7puaFP1	A: alpha bundles	X: ADP-ribosylglycohydrolase (From Topology)	H: ADP-ribosylglycohydrolase (From Topology)	T: ADP-ribosylglycohydrolase	F: ADP_ribosyl_GH	ECOD (1.6)
LB [auth Fc]	PP-binding	e7puaFc1	A: alpha bundles	X: ACP-like	H: Acyl-carrier protein (ACP) (From Topology)	T: Acyl-carrier protein (ACP)	F: PP-binding	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
N [auth CQ]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
D [auth CE]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain	-	Domain
PA [auth DT]	PF00581	Rhodanese-like domain (Rhodanese)	Rhodanese-like domain	Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.	Domain
QA [auth DU]	PF00240	Ubiquitin family (ubiquitin)	Ubiquitin family	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...	This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].	Domain
XA [auth F2]	PF01535	PPR repeat (PPR)	PPR repeat	-	Repeat
XA [auth F2]	PF13812	Pentatricopeptide repeat domain (PPR_3)	Pentatricopeptide repeat domain	-	Repeat
XA [auth F2]	PF17177	Pentacotripeptide-repeat region of PRORP (PPR_long)	Pentacotripeptide-repeat region of PRORP	-	Repeat
AB [auth F6]	PF14687	Domain of unknown function (DUF4460) (DUF4460)	Domain of unknown function (DUF4460)	-	Family
DB [auth FM], EB [auth FN]	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase (NAD_binding_11)	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	3-Hydroxyisobutyrate is a central metabolite in the valine catabolic pathway, and is reversibly oxidised to methylmalonate semi-aldehyde by a specific dehydrogenase belonging to the 3-hydroxyacid dehydrogenase family. The reaction is NADP-dependent a ...	3-Hydroxyisobutyrate is a central metabolite in the valine catabolic pathway, and is reversibly oxidised to methylmalonate semi-aldehyde by a specific dehydrogenase belonging to the 3-hydroxyacid dehydrogenase family. The reaction is NADP-dependent and this region of the enzyme binds NAD. The NAD-binding domain of 6-phosphogluconate dehydrogenase adopts an alpha helical structure [1].	Domain
DB [auth FM], EB [auth FN]	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase (NAD_binding_2)	NAD binding domain of 6-phosphogluconate dehydrogenase	The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.	Domain
HB [auth FW]	PF01451	Low molecular weight phosphotyrosine protein phosphatase (LMWPc)	Low molecular weight phosphotyrosine protein phosphatase	-	Domain
F [auth CH]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
IB [auth FX]	PF13812	Pentatricopeptide repeat domain (PPR_3)	Pentatricopeptide repeat domain	-	Repeat
RB [auth IA]	PF00009	Elongation factor Tu GTP binding domain (GTP_EFTU)	Elongation factor Tu GTP binding domain	This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.	Domain
RB [auth IA]	PF22042	Elongation factor G domain 2 (EF-G_D2)	Elongation factor G domain 2	Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in ot ...	Elongation factor G (EF-G) catalyzes the translocation step of translation. It consists of five structural domains, this entry represents the second domain [1]. This domain adopts a beta barrel structure. This family also includes domains found in other translation factors such as translation initiation factor IF-2, peptide chain release factor, etc.	Domain
G [auth CI]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
H [auth CJ]	PF01476	LysM domain (LysM)	LysM domain	The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth CA]	9S rRNA	-	-	-
J [auth CL]	uS12m	-	-	-
K [auth CN]	uS14m	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
L [auth CO]	uS15m	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
M [auth CP]	bS16m	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle
N [auth CQ]	30S Ribosomal protein S17, putative	structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
O [auth CR]	bS18m	-	-	-
P [auth CS]	uS19m	-	-	-
Q [auth CU]	bS21m	-	-	-
R [auth Ca]	mS22	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
S [auth Cb]	mS23	-	-	-
B [auth CB]	9S rRNA	-	-	-
T [auth Cd]	mS26	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
U [auth Cg]	mS29	structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle intracellular anatomical structure ciliary plasm cilium cellular anatomical entity cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection cell projection organelle cytoplasm protein-containing complex mitochondrion membrane-enclosed lumen membrane-bounded organelle intracellular anatomical structure ciliary plasm cilium cellular anatomical entity cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection cell projection organelle cytoplasm protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle nucleus nuclear lumen
V [auth Ci]	mS33	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
W [auth Cj]	mS34	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
X [auth Ck]	mS35	RNA binding binding organic cyclic compound binding nucleic acid binding	regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process regulation of biological process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process regulation of mRNA catabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process biological regulation negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability cellular process regulation of mRNA metabolic process positive regulation of cellular biosynthetic process mitochondrial gene expression nucleobase-containing compound biosynthetic process RNA biosynthetic process mitochondrial RNA processing nucleic acid biosynthetic process RNA processing	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle mitochondrial protein-containing complex protein-containing complex catalytic complex mitochondrion mRNA editing complex mitochondrial mRNA editing complex intracellular membrane-bounded organelle intracellular organelle organelle
Y [auth Cm]	mS37	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity
Z [auth Cn]	mS38	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast
AA [auth Cp]	Protein FYV4, mitochondrial	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
BA [auth DB]	mS49	-	-	-
CA [auth DC]	mS50	-	-	-
C [auth CC]	uS3m	-	-	-
DA [auth DD]	mS51	-	-	-
EA [auth DE]	mS52	RNA binding binding organic cyclic compound binding nucleic acid binding	regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process regulation of biological process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process regulation of mRNA catabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process biological regulation negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability cellular process regulation of mRNA metabolic process positive regulation of cellular biosynthetic process mitochondrial gene expression nucleobase-containing compound biosynthetic process RNA biosynthetic process mitochondrial RNA processing nucleic acid biosynthetic process RNA processing	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast mitochondrial protein-containing complex protein-containing complex catalytic complex mRNA editing complex mitochondrial mRNA editing complex
FA [auth DF]	mS53	-	-	-
GA [auth DG]	mS54	-	-	-
HA [auth DH]	mS55	-	-	-
IA [auth DI]	mS56	-	-	-
JA [auth DJ]	mS57	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle
KA [auth DK]	mS58	-	-	-
LA [auth DL]	mS59	-	-	-
MA [auth DO]	mS62	-	regulation of biological process biological process involved in interspecies interaction between organisms modulation of formation of structure involved in a symbiotic process biological regulation formation of structure involved in a symbiotic process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus regulation of biological process biological process involved in interspecies interaction between organisms modulation of formation of structure involved in a symbiotic process biological regulation formation of structure involved in a symbiotic process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus cellular process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
D [auth CE]	Ribosomal_S5_C domain-containing protein	structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
NA [auth DP]	mS63	-	-	-
OA [auth DR]	mS65	-	-	-
PA [auth DT]	Rhodanese domain-containing protein	sulfurtransferase activity transferase activity, transferring sulphur-containing groups transferase activity thiosulfate sulfurtransferase activity catalytic activity	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
QA [auth DU]	Ubiquitin-like domain-containing protein	-	-	-
RA [auth DV]	mS69	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
SA [auth DW]	mS70	-	-	-
TA [auth DX]	mS71	-	-	-
UA [auth DY]	mS72	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex intracellular non-membrane-bounded organelle
VA [auth DZ]	mS73	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
WA [auth Da]	mS74	-	-	-
E [auth CF]	bS6m	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
XA [auth F2]	PPR_long domain-containing protein	-	-	-
YA [auth F3]	mt-SAF3	-	-	-
ZA [auth F5]	mt-SAF5	-	-	-
AB [auth F6]	DUF4460 domain-containing protein	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle
BB [auth F7]	mt-SAF7	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
CB [auth F9]	mt-SAF9	-	-	-
DB [auth FM], EB [auth FN]	mt-SAF21	binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding NADP binding small molecule binding NAD binding	-	-
FB [auth FO]	mt-SAF22	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle
GB [auth FP]	mt-SAF23	-	-	-
HB [auth FW]	LMWPc domain-containing protein	-	response to stimulus response to chemical response to arsenic-containing substance	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle
F [auth CH]	30S ribosomal protein S8, putative	structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
IB [auth FX]	mt-SAF27	-	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle kinetoplast
JB [auth FZ]	mt-SAF29	-	-	-
KB [auth Fb]	mt-SAF31	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle
LB [auth Fc]	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding acyl binding small molecule binding	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process cellular biosynthetic process cellular metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process cellular lipid metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process cellular biosynthetic process cellular metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process cellular lipid metabolic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen
MB [auth Fd]	DUF4379 domain-containing protein	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast
NB [auth Ff]	DNA photolyase, putative	DNA photolyase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid deoxyribodipyrimidine photo-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	-	-
OB [auth Fg]	Acyl transferase-like protein, putative	acyltransferase activity transferase activity catalytic activity	-	-
PB [auth Fh]	mt-SAF37	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle kinetoplast
QB [auth Fi]	mt-SAF38	-	-	-
RB [auth IA]	Translation initiation factor IF-2, putative	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle
G [auth CI]	uS9m	structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm
SB [auth IB]	mt-SAF39	-	-	-
TB [auth U8]	Unk8	-	-	-
UB [auth UC]	UnkC	-	-	-
VB [auth UD]	UnkD	-	-	-
WB [auth UF]	UnkF	-	-	-
XB [auth UG]	UnkG	-	-	-
YB [auth UI]	UnkI	-	-	-
ZB [auth UK]	UnkK	-	-	-
AC [auth UM], BC [auth UN], DC [auth UQ]	Unk	-	-	-
CC [auth UP]	UnkP	-	-	-
H [auth CJ]	LysM domain-containing protein	-	-	-
EC [auth Ua]	Unka	-	-	-
FC [auth Ug]	Unkg	-	-	-
I [auth CK]	uS11m	structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome non-membrane-bounded organelle mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit cellular anatomical entity intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
L [auth CO]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
N [auth CQ]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
N [auth CQ]	IPR000266	Small ribosomal subunit protein uS17	Family
O [auth CR]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
U [auth Cg]	IPR019368	Small ribosomal subunit protein mS29	Family
AA [auth Cp]	IPR039603	Small ribosomal subunit protein mS41	Family
AA [auth Cp]	IPR019083	IGR domain	Domain
DA [auth DD]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
GA [auth DG]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
HA [auth DH]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
D [auth CE]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
PA [auth DT]	IPR001763	Rhodanese-like domain	Domain
PA [auth DT]	IPR036873	Rhodanese-like domain superfamily	Homologous Superfamily
QA [auth DU]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
QA [auth DU]	IPR000626	Ubiquitin-like domain	Domain
E [auth CF]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
XA [auth F2]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
XA [auth F2]	IPR002885	Pentatricopeptide repeat	Repeat
XA [auth F2]	IPR033443	PROP1-like, PPR domain	Domain
AB [auth F6]	IPR028031	Domain of unknown function DUF4460	Domain
AB [auth F6]	IPR027986	T-cell activation inhibitor, mitochondrial	Family
BB [auth F7]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
BB [auth F7]	IPR002885	Pentatricopeptide repeat	Repeat
DB [auth FM], EB [auth FN]	IPR006115	6-phosphogluconate dehydrogenase, NADP-binding	Domain
DB [auth FM], EB [auth FN]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
DB [auth FM], EB [auth FN]	IPR013328	6-phosphogluconate dehydrogenase, domain 2	Homologous Superfamily
DB [auth FM], EB [auth FN]	IPR029154	3-hydroxyisobutyrate dehydrogenase-like, NAD-binding domain	Domain
DB [auth FM], EB [auth FN]	IPR008927	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Homologous Superfamily
FB [auth FO]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
GB [auth FP]	IPR050792	ADP-ribosylglycohydrolase	Family
GB [auth FP]	IPR036705	ADP-ribosylation/Crystallin J1 superfamily	Homologous Superfamily
HB [auth FW]	IPR036196	Phosphotyrosine protein phosphatase I superfamily	Homologous Superfamily
HB [auth FW]	IPR023485	Phosphotyrosine protein phosphatase I	Domain
F [auth CH]	IPR000630	Small ribosomal subunit protein uS8	Family
F [auth CH]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
IB [auth FX]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
IB [auth FX]	IPR002885	Pentatricopeptide repeat	Repeat
LB [auth Fc]	IPR006162	Phosphopantetheine attachment site	PTM
LB [auth Fc]	IPR009081	Phosphopantetheine binding ACP domain	Domain
LB [auth Fc]	IPR036736	ACP-like superfamily	Homologous Superfamily
LB [auth Fc]	IPR003231	Acyl carrier protein	Family
MB [auth Fd]	IPR025487	Probable Zinc-ribbon domain	Domain
NB [auth Ff]	IPR036155	Cryptochrome/photolyase, N-terminal domain superfamily	Homologous Superfamily
NB [auth Ff]	IPR006050	DNA photolyase, N-terminal	Domain
NB [auth Ff]	IPR002081	Cryptochrome/DNA photolyase class 1	Family
NB [auth Ff]	IPR036134	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Homologous Superfamily
NB [auth Ff]	IPR005101	Cryptochrome/DNA photolyase, FAD-binding domain	Domain
NB [auth Ff]	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily
OB [auth Fg]	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
OB [auth Fg]	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
OB [auth Fg]	IPR050858	Malonyl CoA-ACP Transacylase/Polyketide Synthase FabD	Family
OB [auth Fg]	IPR014043	Acyl transferase domain	Domain
RB [auth IA]	IPR005225	Small GTP-binding domain	Domain
RB [auth IA]	IPR000178	Translation initiation factor IF-2, bacterial-like	Family
RB [auth IA]	IPR000795	Translational (tr)-type GTP-binding domain	Domain
RB [auth IA]	IPR053905	Elongation factor G-like, domain II	Domain
RB [auth IA]	IPR044145	Translation initiation factor IF-2, domain II	Domain
RB [auth IA]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
RB [auth IA]	IPR015760	Translation initiation factor IF- 2	Family
RB [auth IA]	IPR036925	Translation initiation factor IF-2, domain 3 superfamily	Homologous Superfamily
RB [auth IA]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
G [auth CI]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
G [auth CI]	IPR000754	Small ribosomal subunit protein uS9	Family
G [auth CI]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
H [auth CJ]	IPR018392	LysM domain	Domain
I [auth CK]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily