7PUA | pdb_00007pua

Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
LB [auth Fc]	SCOP2B Superfamily	ACP-like	8095575	3001805	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
RB [auth IA]	Ribosomal_L36e	e7puaIA02	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L36e	ECOD (v295.2)
OB [auth Fg]	Ribosomal_L36e	e7puaFg01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L36e	ECOD (v295.2)
NB [auth Ff]	Ribosomal_L36e	e7puaFf01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L36e	ECOD (v295.2)
LB [auth Fc]	4PPT_N	e7puaFc1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: 4PPT_N	ECOD (v295.2)
IB [auth FX]	AAA_lid_RFC1	e7puaFX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
GB [auth FP]	4PPT_N	e7puaFP1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: 4PPT_N	ECOD (v295.2)
EB [auth FN]	AAA_lid_RFC1	e7puaFN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
DB [auth FM]	Ribosomal_L36e	e7puaFM01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Ribosomal_L36e	ECOD (v295.2)
E [auth CF]	4PPT_N	e7puaCF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: 4PPT_N	ECOD (v295.2)
JA [auth DJ]	AAA_lid_RFC1	e7puaDJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
U [auth Cg]	AAA_lid_RFC1	e7puaCg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth CI]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
IB [auth FX]	PF13812	Pentatricopeptide repeat domain (PPR_3)	Pentatricopeptide repeat domain	-	Repeat
HB [auth FW]	PF01451	Low molecular weight phosphotyrosine protein phosphatase (LMWPc)	Low molecular weight phosphotyrosine protein phosphatase		Domain
AB [auth F6]	PF14687	Domain of unknown function (DUF4460) (DUF4460)	Domain of unknown function (DUF4460)	-	Family
PA [auth DT]	PF00581	Rhodanese-like domain (Rhodanese)	Rhodanese-like domain	Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.	Domain
M [auth CP]	PF09597	Small ribosomal subunit protein mS41 SAM domain (SAM_Ribosomal_mS41)	Small ribosomal subunit protein mS41 SAM domain	This entry represents a SAM-like domain found in fungal mitoribosome protein mS41. The mitochondrion-specific ribosomal protein mS41 family comprises proteins that are integral components of the mitochondrial ribosome, also known as the mitoribosome ...	This entry represents a SAM-like domain found in fungal mitoribosome protein mS41. The mitochondrion-specific ribosomal protein mS41 family comprises proteins that are integral components of the mitochondrial ribosome, also known as the mitoribosome. These proteins play a crucial role in the dedicated translation machinery that synthesizes mitochondrial genome-encoded proteins, which include essential transmembrane subunits of the mitochondrial respiratory chain. The mitoribosomes are tethered to the mitochondrial inner membrane, ensuring that translation products are cotranslationally integrated into the membrane. Additionally, members of the mS41 family are implicated in the regulation of telomere length, a process essential for maintaining chromosome stability and cellular lifespan. Certain members are also required for survival upon exposure to specific environmental stressors, such as the K1 killer toxin.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth CK]	uS11m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
FC [auth Ug]	Unkg	-	-	-
EC [auth Ua]	Unka	-	-	-
H [auth CJ]	LysM domain-containing protein	-	-	-
CC [auth UP]	UnkP	-	-	-
AC [auth UM], BC [auth UN], DC [auth UQ]	Unk	-	-	-
ZB [auth UK]	UnkK	-	-	-
YB [auth UI]	UnkI	-	-	-
XB [auth UG]	UnkG	-	-	-
WB [auth UF]	UnkF	-	-	-
VB [auth UD]	UnkD	-	-	-
UB [auth UC]	UnkC	-	-	-
TB [auth U8]	Unk8	-	-	-
SB [auth IB]	mt-SAF39	-	-	-
G [auth CI]	uS9m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
RB [auth IA]	Translation initiation factor IF-2, putative	translation factor activity translation initiation factor activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding translation factor activity translation initiation factor activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm
QB [auth Fi]	mt-SAF38	-	-	-
PB [auth Fh]	mt-SAF37	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
OB [auth Fg]	Acyl transferase-like protein, putative	malonyltransferase activity acyltransferase activity [acyl-carrier-protein] S-malonyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity S-malonyltransferase activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	-
NB [auth Ff]	DNA photolyase, putative	DNA binding binding nucleic acid binding DNA photolyase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid deoxyribodipyrimidine photo-lyase activity lyase activity catalytic activity carbon-carbon lyase activity FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding DNA binding binding nucleic acid binding DNA photolyase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid deoxyribodipyrimidine photo-lyase activity lyase activity catalytic activity carbon-carbon lyase activity FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process pyrimidine dimer repair macromolecule metabolic process photoreactive repair cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process pyrimidine dimer repair macromolecule metabolic process photoreactive repair DNA repair	-
MB [auth Fd]	DUF4379 domain-containing protein	cation binding ion binding binding metal ion binding small molecule binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
LB [auth Fc]	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding acyl binding small molecule binding	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen
KB [auth Fb]	mt-SAF31	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
JB [auth FZ]	mt-SAF29	-	-	-
IB [auth FX]	mt-SAF27	cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle kinetoplast
F [auth CH]	30S ribosomal protein S8, putative	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
HB [auth FW]	LMWPc domain-containing protein	cation binding ion binding binding metal ion binding small molecule binding	response to stimulus response to chemical response to arsenic-containing substance	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
GB [auth FP]	mt-SAF23	-	-	-
FB [auth FO]	mt-SAF22	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
DB [auth FM], EB [auth FN]	mt-SAF21	binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding NADP binding small molecule binding NAD binding	-	-
CB [auth F9]	mt-SAF9	-	-	-
BB [auth F7]	mt-SAF7	RNA binding binding nucleic acid binding mRNA binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
AB [auth F6]	DUF4460 domain-containing protein	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
ZA [auth F5]	mt-SAF5	-	-	-
YA [auth F3]	mt-SAF3	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
XA [auth F2]	PPR_long domain-containing protein	tRNA-specific ribonuclease activity endonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity, acting on a tRNA hydrolase activity nuclease activity hydrolase activity, acting on ester bonds RNA endonuclease activity ribonuclease P activity catalytic activity	RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process tRNA processing RNA 5'-end processing metabolic process RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process tRNA processing RNA 5'-end processing metabolic process cellular process macromolecule metabolic process RNA processing tRNA 5'-leader removal tRNA 5'-end processing	-
E [auth CF]	bS6m	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex
WA [auth Da]	mS74	cation binding ion binding binding metal ion binding small molecule binding	-	-
VA [auth DZ]	mS73	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
UA [auth DY]	mS72	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
TA [auth DX]	mS71	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
SA [auth DW]	mS70	-	-	-
RA [auth DV]	mS69	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
QA [auth DU]	Ubiquitin-like domain-containing protein	-	-	-
PA [auth DT]	Rhodanese domain-containing protein	thiosulfate-cyanide sulfurtransferase activity sulfurtransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
OA [auth DR]	mS65	-	-	-
NA [auth DP]	mS63	-	-	-
D [auth CE]	Ribosomal_S5_C domain-containing protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
MA [auth DO]	mS62	-	regulation of biological process biological process involved in interspecies interaction between organisms modulation of formation of structure involved in a symbiotic process biological regulation formation of structure involved in a symbiotic process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus regulation of biological process biological process involved in interspecies interaction between organisms modulation of formation of structure involved in a symbiotic process biological regulation formation of structure involved in a symbiotic process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus cellular process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
LA [auth DL]	mS59	-	-	-
KA [auth DK]	mS58	-	-	-
JA [auth DJ]	mS57	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex
IA [auth DI]	mS56	-	-	-
HA [auth DH]	mS55	-	-	-
GA [auth DG]	mS54	-	-	-
FA [auth DF]	mS53	-	-	-
EA [auth DE]	mS52	RNA binding binding nucleic acid binding	regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process regulation of biological process negative regulation of metabolic process primary metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process positive regulation of biological process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process regulation of mRNA catabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process biological regulation negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability cellular process regulation of mRNA metabolic process mitochondrial gene expression nucleobase-containing compound biosynthetic process RNA biosynthetic process mitochondrial RNA processing nucleic acid biosynthetic process mitochondrial RNA metabolic process RNA processing	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast mitochondrial protein-containing complex protein-containing complex catalytic complex mRNA editing complex mitochondrial mRNA editing complex
DA [auth DD]	mS51	-	-	-
C [auth CC]	uS3m	-	-	-
CA [auth DC]	mS50	-	-	-
BA [auth DB]	mS49	-	-	-
AA [auth Cp]	Protein FYV4, mitochondrial	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
Z [auth Cn]	mS38	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
Y [auth Cm]	mS37	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
X [auth Ck]	mS35	RNA binding binding nucleic acid binding	regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process regulation of biological process negative regulation of metabolic process primary metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process positive regulation of biological process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process regulation of mRNA catabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process biological regulation negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability cellular process regulation of mRNA metabolic process mitochondrial gene expression nucleobase-containing compound biosynthetic process RNA biosynthetic process mitochondrial RNA processing nucleic acid biosynthetic process mitochondrial RNA metabolic process RNA processing	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle mitochondrial protein-containing complex protein-containing complex catalytic complex mitochondrion mRNA editing complex mitochondrial mRNA editing complex intracellular membrane-bounded organelle intracellular organelle organelle
W [auth Cj]	mS34	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
V [auth Ci]	mS33	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
U [auth Cg]	mS29	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding guanyl nucleotide binding GTP binding guanyl ribonucleotide binding structural molecule activity structural constituent of ribosome cation binding metal ion binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell projection ciliary plasm cilium plasma membrane bounded cell projection protein-containing complex membrane-enclosed lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell projection ciliary plasm cilium plasma membrane bounded cell projection protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex nucleus nuclear lumen
T [auth Cd]	mS26	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
B [auth CB]	9S rRNA	-	-	-
S [auth Cb]	mS23	-	-	-
R [auth Ca]	mS22	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle axoneme ciliary plasm cilium intracellular membraneless organelle plasma membrane bounded cell projection cell projection membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle axoneme ciliary plasm cilium intracellular membraneless organelle plasma membrane bounded cell projection cell projection cytoskeleton membraneless organelle protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit organelle lumen ribonucleoprotein complex
Q [auth CU]	bS21m	-	-	-
P [auth CS]	uS19m	-	-	-
O [auth CR]	bS18m	-	-	-
N [auth CQ]	30S Ribosomal protein S17, putative	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex ribonucleoprotein complex membraneless organelle intracellular membraneless organelle ribosome
M [auth CP]	bS16m	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
L [auth CO]	uS15m	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
K [auth CN]	uS14m	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
J [auth CL]	uS12m	-	-	-
A [auth CA]	9S rRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth CK]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
H [auth CJ]	IPR018392	LysM domain	Domain
G [auth CI]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
G [auth CI]	IPR000754	Small ribosomal subunit protein uS9	Family
G [auth CI]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
RB [auth IA]	IPR005225	Small GTP-binding domain	Domain
RB [auth IA]	IPR000178	Translation initiation factor IF-2, bacterial-like	Family
RB [auth IA]	IPR000795	Translational (tr)-type GTP-binding domain	Domain
RB [auth IA]	IPR053905	Elongation factor G-like, domain II	Domain
RB [auth IA]	IPR044145	Translation initiation factor IF-2, domain II	Domain
RB [auth IA]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
RB [auth IA]	IPR015760	Translation initiation factor IF- 2	Family
RB [auth IA]	IPR036925	Translation initiation factor IF-2, domain 3 superfamily	Homologous Superfamily
RB [auth IA]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
OB [auth Fg]	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
OB [auth Fg]	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
OB [auth Fg]	IPR050858	Malonyl CoA-ACP Transacylase/Polyketide Synthase FabD	Family
OB [auth Fg]	IPR014043	Acyl transferase domain	Domain
NB [auth Ff]	IPR036155	Cryptochrome/photolyase, N-terminal domain superfamily	Homologous Superfamily
NB [auth Ff]	IPR006050	DNA photolyase, N-terminal	Domain
NB [auth Ff]	IPR002081	Cryptochrome/DNA photolyase class 1	Family
NB [auth Ff]	IPR036134	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Homologous Superfamily
NB [auth Ff]	IPR005101	Cryptochrome/DNA photolyase, FAD-binding domain	Domain
NB [auth Ff]	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily
MB [auth Fd]	IPR025487	Treble clef zinc finger domain	Domain
LB [auth Fc]	IPR006162	Phosphopantetheine attachment site	PTM
LB [auth Fc]	IPR009081	Phosphopantetheine binding ACP domain	Domain
LB [auth Fc]	IPR036736	ACP-like superfamily	Homologous Superfamily
LB [auth Fc]	IPR003231	Acyl carrier protein	Family
IB [auth FX]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
IB [auth FX]	IPR002885	Pentatricopeptide repeat	Repeat
F [auth CH]	IPR000630	Small ribosomal subunit protein uS8	Family
F [auth CH]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
HB [auth FW]	IPR036196	Phosphotyrosine protein phosphatase I superfamily	Homologous Superfamily
HB [auth FW]	IPR023485	Phosphotyrosine protein phosphatase I	Domain
GB [auth FP]	IPR050792	ADP-ribosylglycohydrolase-like	Family
GB [auth FP]	IPR036705	ADP-ribosylation/Crystallin J1 superfamily	Homologous Superfamily
FB [auth FO]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
DB [auth FM], EB [auth FN]	IPR006115	6-phosphogluconate dehydrogenase, NADP-binding	Domain
DB [auth FM], EB [auth FN]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
DB [auth FM], EB [auth FN]	IPR013328	6-phosphogluconate dehydrogenase, domain 2	Homologous Superfamily
DB [auth FM], EB [auth FN]	IPR029154	3-hydroxyisobutyrate dehydrogenase-like, NAD-binding domain	Domain
DB [auth FM], EB [auth FN]	IPR008927	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Homologous Superfamily
BB [auth F7]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
BB [auth F7]	IPR002885	Pentatricopeptide repeat	Repeat
AB [auth F6]	IPR028031	Domain of unknown function DUF4460	Domain
AB [auth F6]	IPR027986	T-cell activation inhibitor, mitochondrial	Family
XA [auth F2]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
XA [auth F2]	IPR002885	Pentatricopeptide repeat	Repeat
XA [auth F2]	IPR033443	PROP1-like, PPR domain	Domain
E [auth CF]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
QA [auth DU]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
QA [auth DU]	IPR000626	Ubiquitin-like domain	Domain
PA [auth DT]	IPR001763	Rhodanese-like domain	Domain
PA [auth DT]	IPR036873	Rhodanese-like domain superfamily	Homologous Superfamily
D [auth CE]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
HA [auth DH]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
GA [auth DG]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
DA [auth DD]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
AA [auth Cp]	IPR019083	Small ribosomal subunit protein mS41, SAM domain	Domain
AA [auth Cp]	IPR039603	Small ribosomal subunit protein mS41	Family
U [auth Cg]	IPR019368	Small ribosomal subunit protein mS29	Family
S [auth Cb]	IPR059199	Ribosomal protein S23-like	Family
O [auth CR]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
N [auth CQ]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
N [auth CQ]	IPR000266	Small ribosomal subunit protein uS17	Family
L [auth CO]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.