7ZO0

Crystal structure of catalytic inactive unliganded form of FucOB, a GH95 family alpha-1,2-fucosidase from Akkermansia muciniphila


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe7zo0A1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: supersandwich (From Topology)T: supersandwichF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7zo0A3 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycoside hydrolase family 127 middle domain-related (From Topology)T: Glycoside hydrolase family 127 middle domain-relatedF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe7zo0A2 A: alpha superhelicesX: Repetitive alpha hairpinsH: alpha/alpha toroid (From Topology)T: alpha/alpha toroidF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22124Glycosyl hydrolase family 95 catalytic domain (Glyco_hydro_95_cat)Glycosyl hydrolase family 95 catalytic domainThe founding member of the GH95 family of glycosyl hydrolases is alpha-1,2-fucosidase that catalyses the hydrolysis of an alpha-1,2-linked fucose. A member of this family, FucOB from A. muciniphila was shown to hydrolyse all three types of H antigen ...The founding member of the GH95 family of glycosyl hydrolases is alpha-1,2-fucosidase that catalyses the hydrolysis of an alpha-1,2-linked fucose. A member of this family, FucOB from A. muciniphila was shown to hydrolyse all three types of H antigen structures to obtain the afucosylated Bombay phenotype [6]. Members of this family are multidomain proteins and contain a central catalytic domain with an (alpha/alpha)6 helical barrel topology, represented by this entry.
Domain
PF21307Glycoside hydrolase family 95, C-terminal domain (Glyco_hydro_95_C)Glycoside hydrolase family 95, C-terminal domainThis domain is found in Alpha-fucosidase from Bifidobacterium bifidum (AfcA) and in other members of the glycoside hydrolase family 95 from bacteria and plants. AfcA hydrolyses the glycosidic linkage of Fuc1-2Gal via an inverting mechanism. This entr ...This domain is found in Alpha-fucosidase from Bifidobacterium bifidum (AfcA) and in other members of the glycoside hydrolase family 95 from bacteria and plants. AfcA hydrolyses the glycosidic linkage of Fuc1-2Gal via an inverting mechanism. This entry represents the C-terminal beta domain present within the catalytic region of this protein. The domain forms a two- layered jelly roll fold. Its specific function remains unknown [1,2].
Domain
PF14498Glycosyl hydrolase family 65, N-terminal domain (Glyco_hyd_65N_2)Glycosyl hydrolase family 65, N-terminal domainThis domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.Domain