7Z5A
Crystal structure of the trapped complex of mouse Endonuclease VIII-LIKE 3 (mNEIL3) and hairpin DNA with 5'overhang
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Fapy_DNA_glyco | e7z5aA1 | A: beta barrels | X: MutM N-terminal domain-like | H: N-terminal domain of MutM-like DNA repair proteins (From Topology) | T: N-terminal domain of MutM-like DNA repair proteins | F: Fapy_DNA_glyco | ECOD (1.6) |
A | H2TH | e7z5aA2 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: H2TH | ECOD (1.6) |
A | zf-FPG_IleRS | e7z5aA3 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: C-terminal, Zn-finger domain of MutM-like DNA repair proteins (From Topology) | T: C-terminal, Zn-finger domain of MutM-like DNA repair proteins | F: zf-FPG_IleRS | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06831 | Formamidopyrimidine-DNA glycosylase H2TH domain (H2TH) | Formamidopyrimidine-DNA glycosylase H2TH domain | Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the central domain containing the DNA-binding helix-two turn-helix domain [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036443 | Zinc finger, RanBP2-type superfamily | Homologous Superfamily | |
IPR000214 | Zinc finger, DNA glycosylase/AP lyase-type | Domain | |
IPR035937 | MutM-like, N-terminal | Homologous Superfamily | |
IPR015887 | DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site | Binding Site | |
IPR012319 | Formamidopyrimidine-DNA glycosylase, catalytic domain | Domain | |
IPR010666 | Zinc finger, GRF-type | Domain | |
IPR015886 | DNA glycosylase/AP lyase, H2TH DNA-binding | Domain | |
IPR001876 | Zinc finger, RanBP2-type | Domain | |
IPR010979 | Small ribosomal subunit protein uS13-like, H2TH | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth E] | PED | AA0494 :  N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium MOD:01454 | :