7YRQ
Cryo-EM structure of human Peroxisomal ABC Transporter ABCD1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF06472 | e7yrqA1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC exporter transmembrane domain fold (From Topology) | T: Type I ABC exporter transmembrane domain fold | F: PF06472 | ECOD (1.6) |
A | PF00005 | e7yrqA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
B | PF06472 | e7yrqB1 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type I ABC exporter transmembrane domain fold (From Topology) | T: Type I ABC exporter transmembrane domain fold | F: PF06472 | ECOD (1.6) |
B | PF00005 | e7yrqB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00005 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06472 | ABC transporter transmembrane region 2 (ABC_membrane_2) | ABC transporter transmembrane region 2 | - | Family | |
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003439 | ABC transporter-like, ATP-binding domain | Domain | |
IPR050835 | ATP-binding cassette sub-family D | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR011527 | ABC transporter type 1, transmembrane domain | Domain | |
IPR005283 | Peroxysomal long chain fatty acyl transporter | Family | |
IPR017871 | ABC transporter-like, conserved site | Conserved Site | |
IPR036640 | ABC transporter type 1, transmembrane domain superfamily | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | ABC transporter D familiy (ABCD) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |