7T9B
ApexGT5 in complex with GT5-d42.16 and RM20A3 Fabs
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
J [auth F] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GP120_2nd | e7t9bA2 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
A | GP120_3rd | e7t9bA1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
A | GP120_1st | e7t9bA3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
E [auth C] | GP120_2nd | e7t9bC3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
E [auth C] | GP120_3rd | e7t9bC1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
E [auth C] | GP120_1st | e7t9bC2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
I [auth E] | GP120_2nd | e7t9bE3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
I [auth E] | GP120_3rd | e7t9bE1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
I [auth E] | GP120_1st | e7t9bE2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
B | GP41_1st | e7t9bB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
F [auth D] | GP41_1st | e7t9bD1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
J [auth F] | GP41_1st | e7t9bF1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
C [auth J] | V-set_12 | e7t9bJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
G [auth M] | V-set_12 | e7t9bM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
K [auth O] | V-set_12 | e7t9bO1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D [auth K] | V-set_3 | e7t9bK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
H [auth N] | V-set_3 | e7t9bN1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
L [auth P] | V-set_3 | e7t9bP1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
M [auth H] | V-set_12 | e7t9bH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
N [auth L] | V-set | e7t9bL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth J], G [auth M], K [auth O] | Heavy Chain | IGHV3 | - | hiv-1 envelope apexgt5 gp41 | SAbDab (2024-08-16) |
D [auth K], H [auth N], L [auth P] | Light Chain | IGLV2 | Lambda | hiv-1 envelope apexgt5 gp41 | SAbDab (2024-08-16) |
M [auth H] | Heavy Chain | IGHV3 | - | hiv-1 envelope apexgt5 gp120 | hiv-1 envelope apexgt5 gp120 | hiv-1 envelope apexgt5 gp120 | SAbDab (2024-08-16) |
N [auth L] | Light Chain | IGKV3 | Kappa | hiv-1 envelope apexgt5 gp120 | hiv-1 envelope apexgt5 gp120 | hiv-1 envelope apexgt5 gp120 | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B, F [auth D], J [auth F] | PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B, F [auth D], J [auth F] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
B, F [auth D], J [auth F] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
B, F [auth D], J [auth F] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
B, F [auth D], J [auth F] | IPR037527 | Envelope glycoprotein Gp160 | Family |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
M [auth H] | TYS | Parent Component: TYR :  AA0172 :  O4'-sulfo-L-tyrosine MOD:00181 |