7PEQ | pdb_00007peq

Model of the outer rings of the human nuclear pore complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth AC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)
BA [auth DC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)
J [auth BC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)
S [auth CC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)
C [auth AE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
DA [auth DE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
L [auth BE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
U [auth CE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
F [auth AH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
GA [auth DH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
O [auth BH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
X [auth CH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
H [auth AJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
H [auth AJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)
IA [auth DJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
IA [auth DJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)
Q [auth BJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)
Q [auth BJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
Z [auth CJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
Z [auth CJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AC]Arm, ARM_PUBe7peqAC1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
BA [auth DC]Arm, ARM_PUBe7peqDC1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
J [auth BC]Arm, ARM_PUBe7peqBC1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
S [auth CC]Arm, ARM_PUBe7peqCC1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
B [auth AD]Arm, ARM_PUBe7peqAD1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
CA [auth DD]Arm, ARM_PUBe7peqDD1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
K [auth BD]Arm, ARM_PUBe7peqBD1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
T [auth CD]Arm, ARM_PUBe7peqCD1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
C [auth AE]Arm, ARM_PUBe7peqAE1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
DA [auth DE]Arm, ARM_PUBe7peqDE1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
L [auth BE]Arm, ARM_PUBe7peqBE1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
U [auth CE]Arm, ARM_PUBe7peqCE1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
D [auth AF]Arm, ARM_PUBe7peqAF1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
EA [auth DF]Arm, ARM_PUBe7peqDF1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
M [auth BF]Arm, ARM_PUBe7peqBF1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
V [auth CF]Arm, ARM_PUBe7peqCF1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
E [auth AG]Arm, ARM_PUBe7peqAG1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
FA [auth DG]Arm, ARM_PUBe7peqDG1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
W [auth CG]Arm, ARM_PUBe7peqCG1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
N [auth BG]Arm, ARM_PUBe7peqBG1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
F [auth AH]Arm, ARM_PUBe7peqAH1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
GA [auth DH]Arm, ARM_PUBe7peqDH1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
O [auth BH]Arm, ARM_PUBe7peqBH1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
X [auth CH]Arm, ARM_PUBe7peqCH1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
G [auth AI]Arm, ARM_PUBe7peqAI1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
HA [auth DI]Arm, ARM_PUBe7peqDI1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
P [auth BI]Arm, ARM_PUBe7peqBI1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
Y [auth CI]Arm, ARM_PUBe7peqCI1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
H [auth AJ]Cation_ATPasee7peqAJ1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (v294.2)
IA [auth DJ]Arm, ARM_PUBe7peqDJ1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
Q [auth BJ]Arm, ARM_PUBe7peqBJ1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
Z [auth CJ]Arm, ARM_PUBe7peqCJ1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
AA [auth CK]Arm, ARM_PUBe7peqCK1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
I [auth AK]Arm, ARM_PUBe7peqAK1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
JA [auth DK]Arm, ARM_PUBe7peqDK1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)
R [auth BK]Arm, ARM_PUBe7peqBK1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Arm, ARM_PUBECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
PF03177Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)Non-repetitive/WGA-negative nucleoporin C-terminal- Repeat
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
PF12110Nuclear protein 96 (Nup96)Nuclear protein 96Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ...Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. [1] [2]
Domain
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Repeat
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
PF23347Nup160 C-terminal TPR (TPR_Nup160_C)Nup160 C-terminal TPR- Repeat
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
PF23354NUP160/120 middle TPR (TPR_NUP160_120_M)NUP160/120 middle TPR- Repeat
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
PF11715Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160)Nucleoporin Nup120/160, beta-propeller domain- Repeat
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
Nuclear pore complex protein Nup133
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
Nuclear pore complex protein Nup107
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
Nuclear pore complex protein Nup96
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
Protein SEC13 homolog
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
Nucleoporin SEH1
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
Nuclear pore complex protein Nup85
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
Nucleoporin Nup43-
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
Nuclear pore complex protein Nup160
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
Nucleoporin Nup37-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
IPR037624Nuclear pore complex protein Nup133-likeFamily
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
IPR007252Nuclear pore protein 84/107Family
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR037665Nucleoporin peptidase S59-likeFamily
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR037363Sec13/Seh1 familyFamily
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR001680WD40 repeatRepeat
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR037363Sec13/Seh1 familyFamily
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR001680WD40 repeatRepeat
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
IPR011502Nucleoporin Nup85-likeFamily
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR019775WD40 repeat, conserved siteConserved Site
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR001680WD40 repeatRepeat
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR021717Nucleoporin Nup120/160Family
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR056547NUP160, helical domainDomain
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR056535NUP160, middle TPR domainDomain
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR059141Nucleoporin Nup120/160, beta-propeller domainDomain
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR056536NUP160, C-terminal TPR domainDomain
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR019775WD40 repeat, conserved siteConserved Site
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR037626Nucleoporin Nup37Family
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR001680WD40 repeatRepeat
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
Q8WUM0
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
P57740
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
P52948
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
P55735
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
Q96EE3
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
Q9BW27
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
Q8NFH3
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
Q12769
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
Q8NFH4