7LNK | pdb_00007lnk

Gorilla Bocavirus 1 Capsid

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
ZA [auth z]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
Z	SCOP2 Family	Parvovirinae-like VP	8102662	4003479	SCOP2 (2022-06-29)
Z	SCOP2 Superfamily	ssDNA viruses	8102663	3000931	SCOP2 (2022-06-29)
YA [auth y]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
HB [auth 8]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
GB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
FB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
EB [auth 5]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
DB [auth 4]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
CB [auth 3]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
BB [auth 2]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
AB [auth 1]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	ssDNA viruses	8102663	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DctP	e7lnkA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: DctP	ECOD (v294.2)
E	Omp85	e7lnkE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
LA [auth l]	Omp85	e7lnkl1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
M	Omp85	e7lnkM1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
RA [auth r]	Omp85	e7lnkr1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
S	Omp85	e7lnkS1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
ZA [auth z]	Omp85	e7lnkz1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
Z	Omp85	e7lnkZ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
YA [auth y]	Omp85	e7lnky1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
Y	Omp85	e7lnkY1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
XA [auth x]	Omp85	e7lnkx1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
X	Omp85	e7lnkX1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
WA [auth w]	Omp85	e7lnkw1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
W	Omp85	e7lnkW1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
VA [auth v]	Omp85	e7lnkv1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
V	Omp85	e7lnkV1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
UA [auth u]	Omp85	e7lnku1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
U	Omp85	e7lnkU1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
TA [auth t]	Omp85	e7lnkt1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
T	Omp85	e7lnkT1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
SA [auth s]	Omp85	e7lnks1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
R	Omp85	e7lnkR1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
QA [auth q]	Omp85	e7lnkq1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
Q	Omp85	e7lnkQ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
PA [auth p]	Omp85	e7lnkp1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
P	Omp85	e7lnkP1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
OA [auth o]	Omp85	e7lnko1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
O	Omp85	e7lnkO1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
NA [auth n]	Omp85	e7lnkn1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
N	Omp85	e7lnkN1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
MA [auth m]	Omp85	e7lnkm1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
L	Omp85	e7lnkL1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
KA [auth k]	Omp85	e7lnkk1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
K	Omp85	e7lnkK1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
JA [auth j]	Omp85	e7lnkj1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
J	Omp85	e7lnkJ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
IA [auth i]	Omp85	e7lnki1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
I	Omp85	e7lnkI1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
HB [auth 8]	Omp85	e7lnk81	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
HA [auth h]	Omp85	e7lnkh1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
H	Omp85	e7lnkH1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
GB [auth 7]	Omp85	e7lnk71	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
GA [auth g]	Omp85	e7lnkg1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
G	Omp85	e7lnkG1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
FB [auth 6]	Omp85	e7lnk61	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
FA [auth f]	Omp85	e7lnkf1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
F	Omp85	e7lnkF1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
EB [auth 5]	Omp85	e7lnk51	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
EA [auth e]	Omp85	e7lnke1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
DB [auth 4]	Omp85	e7lnk41	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
DA [auth d]	Omp85	e7lnkd1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
D	Omp85	e7lnkD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
CB [auth 3]	Omp85	e7lnk31	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
CA [auth c]	Omp85	e7lnkc1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
C	Omp85	e7lnkC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
BB [auth 2]	Omp85	e7lnk21	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
BA [auth b]	Omp85	e7lnkb1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
B	Omp85	e7lnkB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
AB [auth 1]	Omp85	e7lnk11	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)
AA [auth a]	Omp85	e7lnka1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.