7BT2 | pdb_00007bt2

Crystal structure of the SERCA2a in the E2.ATP state

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	E1-E2_ATPase_N	e7bt2A3	A: beta sandwiches	X: jelly-roll	H: Calcium ATPase, transduction domain A (From Topology)	T: Calcium ATPase, transduction domain A	F: E1-E2_ATPase_N	ECOD (1.6)
A	Cation_ATPase_C	e7bt2A1	A: alpha bundles	X: Calcium ATPase transmembrane domain-related (From Homology)	H: Calcium ATPase transmembrane domain-related	T: Calcium ATPase transmembrane domain M	F: Cation_ATPase_C	ECOD (1.6)
A	Cation_ATPase	e7bt2A4	A: a+b complex topology	X: Metal cation-transporting ATPase, ATP-binding domain (From Topology)	H: Metal cation-transporting ATPase, ATP-binding domain (From Topology)	T: Metal cation-transporting ATPase, ATP-binding domain	F: Cation_ATPase	ECOD (1.6)
A	Hydrolase_3_1	e7bt2A2	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: Hydrolase_3_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1110.10	Alpha Beta	3-Layer(aba) Sandwich	Calcium-transporting ATPase, cytoplasmic domain N	Calcium-transporting ATPase, cytoplasmic domain N	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00689	Cation transporting ATPase, C-terminus (Cation_ATPase_C)	Cation transporting ATPase, C-terminus	-	Family
A	PF00702	haloacid dehalogenase-like hydrolase (Hydrolase)	haloacid dehalogenase-like hydrolase	This family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted fo ...	This family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain [1]. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria [2].	Domain
A	PF00690	Cation transporter/ATPase, N-terminus (Cation_ATPase_N)	Cation transporter/ATPase, N-terminus	Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport.	Domain
A	PF00122	E1-E2 ATPase (E1-E2_ATPase)	E1-E2 ATPase	-	Family
A	PF13246	Cation transport ATPase (P-type) (Cation_ATPase)	Cation transport ATPase (P-type)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	RNA binding binding lncRNA binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding RNA binding binding lncRNA binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity P-type transmembrane transporter activity P-type calcium transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity ATP-dependent activity P-type ion transporter activity active monoatomic ion transmembrane transporter activity active transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential transporter activity metal ion transmembrane transporter activity transmembrane transporter activity cation binding calcium ion binding metal ion binding protein binding transmembrane transporter binding S100 protein binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity enzyme binding	organelle localization by membrane tethering localization organelle localization cellular process membrane docking inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis positive regulation of endoplasmic reticulum calcium ion concentration cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis organelle localization by membrane tethering localization organelle localization cellular process membrane docking inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis positive regulation of endoplasmic reticulum calcium ion concentration cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis heart process multicellular organismal process system process regulation of biological process regulation of heart contraction regulation of system process biological regulation positive regulation of biological process positive regulation of heart rate positive regulation of blood circulation positive regulation of heart contraction circulatory system process regulation of blood circulation positive regulation of multicellular organismal process regulation of multicellular organismal process regulation of biological quality heart contraction blood circulation regulation of heart rate regulation of cardiac conduction cardiac conduction cellular response to stimulus regulation of cellular process response to stimulus signaling intracellular signal transduction cell communication ER-nucleus signaling pathway signal transduction cellular component disassembly catabolic process protein-containing complex organization macroautophagy autophagy protein-containing complex disassembly cellular component organization autophagosome maturation autophagosome membrane docking metabolic process cellular component organization or biogenesis process utilizing autophagic mechanism response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress response to chemical cellular response to oxidative stress cellular response to chemical stress transport monoatomic ion transmembrane transport inorganic ion transmembrane transport establishment of localization calcium ion transport metal ion transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport cellular localization intracellular transport calcium ion transport from cytosol to endoplasmic reticulum establishment of localization in cell cytosol to endoplasmic reticulum transport regulation of actin filament-based process cardiac muscle contraction striated muscle contraction regulation of cardiac muscle cell action potential actin filament-based process cardiac muscle cell contraction regulation of action potential regulation of cardiac muscle contraction action potential actin filament-based movement muscle contraction muscle system process regulation of muscle system process regulation of cardiac muscle cell action potential involved in regulation of contraction regulation of striated muscle contraction regulation of actin filament-based movement regulation of muscle contraction regulation of cardiac muscle cell contraction actin-mediated cell contraction cardiac muscle cell action potential regulation of membrane potential cell adhesion mitochondrion-endoplasmic reticulum membrane tethering membrane organization developmental process cellular developmental process cell development muscle cell differentiation muscle structure development T-tubule organization muscle cell development cell differentiation plasma membrane organization anatomical structure development endomembrane system organization neuron cellular homeostasis intracellular signaling cassette regulation of cardiac muscle contraction by calcium ion signaling calcium-mediated signaling response to endoplasmic reticulum stress relaxation of cardiac muscle relaxation of muscle regulation of the force of heart contraction autophagosome assembly organelle assembly vacuole organization autophagosome organization cellular component biogenesis organelle organization cellular component assembly regulation of muscle adaptation striated muscle adaptation transition between fast and slow fiber regulation of skeletal muscle adaptation muscle adaptation regulation of response to stimulus skeletal muscle adaptation epidermis development tissue development negative regulation of biological process negative regulation of blood circulation negative regulation of heart contraction negative regulation of multicellular organismal process positive regulation of cardiac muscle cell apoptotic process positive regulation of programmed cell death muscle cell apoptotic process positive regulation of striated muscle cell apoptotic process regulation of apoptotic process regulation of cardiac muscle cell apoptotic process regulation of muscle cell apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process cardiac muscle cell apoptotic process positive regulation of muscle cell apoptotic process regulation of striated muscle cell apoptotic process striated muscle cell apoptotic process apoptotic process programmed cell death positive regulation of cellular process sarcoplasmic reticulum calcium ion transport negative regulation of receptor binding regulation of protein binding regulation of molecular function regulation of receptor binding negative regulation of protein binding regulation of binding negative regulation of binding negative regulation of molecular function regulation of cardiac muscle cell membrane potential regulation of localization regulated exocytosis synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport vesicle-mediated transport in synapse calcium ion-regulated exocytosis of neurotransmitter trans-synaptic signaling neurotransmitter secretion regulation of synaptic vesicle exocytosis neurotransmitter transport regulation of secretion signal release from synapse exocytosis regulation of trans-synaptic signaling regulation of calcium ion-dependent exocytosis of neurotransmitter modulation of chemical synaptic transmission regulation of calcium ion-dependent exocytosis regulation of regulated secretory pathway synaptic signaling secretion by cell regulation of secretion by cell signal release calcium-ion regulated exocytosis regulation of signaling secretion regulation of transport regulation of neurotransmitter transport export from cell cell-cell signaling regulation of vesicle-mediated transport chemical synaptic transmission regulation of neurotransmitter secretion anterograde trans-synaptic signaling regulation of exocytosis regulation of cell communication calcium ion import into sarcoplasmic reticulum muscle hypertrophy striated muscle hypertrophy cardiac muscle adaptation cardiac muscle hypertrophy cardiac muscle hypertrophy in response to stress muscle hypertrophy in response to stress	cellular anatomical structure membrane ATPase dependent transmembrane transport complex cation-transporting ATPase complex protein-containing complex transmembrane transporter complex membrane protein complex transporter complex calcium ion-transporting ATPase complex membrane-bounded organelle intracellular anatomical structure longitudinal sarcoplasmic reticulum intracellular membrane-bounded organelle endomembrane system cellular anatomical structure membrane ATPase dependent transmembrane transport complex cation-transporting ATPase complex protein-containing complex transmembrane transporter complex membrane protein complex transporter complex calcium ion-transporting ATPase complex membrane-bounded organelle intracellular anatomical structure longitudinal sarcoplasmic reticulum intracellular membrane-bounded organelle endomembrane system sarcoplasm intracellular organelle organelle endoplasmic reticulum sarcoplasmic reticulum cytoplasm platelet dense tubular network platelet dense tubular network membrane bounding membrane of organelle organelle membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network sarcoplasmic reticulum membrane endoplasmic reticulum membrane cell periphery plasma membrane synapse cell junction ribbon synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001757	P-type ATPase	Family
A	IPR018303	P-type ATPase, phosphorylation site	PTM
A	IPR023298	P-type ATPase, transmembrane domain superfamily	Homologous Superfamily
A	IPR036412	HAD-like superfamily	Homologous Superfamily
A	IPR023299	P-type ATPase, cytoplasmic domain N	Homologous Superfamily
A	IPR004014	Cation-transporting P-type ATPase, N-terminal	Domain
A	IPR044492	P-type ATPase, haloacid dehalogenase domain	Domain
A	IPR006068	Cation-transporting P-type ATPase, C-terminal	Domain
A	IPR023214	HAD superfamily	Homologous Superfamily
A	IPR008250	P-type ATPase, A domain superfamily	Homologous Superfamily
A	IPR005782	P-type ATPase, subfamily IIA, SERCA-type	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P16615	Darier disease acrokeratosis verruciformis status epilepticus type 2 diabetes mellitus congestive heart failure myocardial stunning heart disease Ventricular Dysfunction, Left bipolar disorder ductal breast carcinoma in situ ovarian cancer pancreatic intraductal papillary-mucinous neoplasm Gaucher disease pituitary cancer invasive ductal breast carcinoma Darier disease acrokeratosis verruciformis status epilepticus type 2 diabetes mellitus congestive heart failure myocardial stunning heart disease Ventricular Dysfunction, Left bipolar disorder ductal breast carcinoma in situ ovarian cancer pancreatic intraductal papillary-mucinous neoplasm Gaucher disease pituitary cancer invasive ductal breast carcinoma atypical teratoid rhabdoid tumor malignant ependymoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma Emery-Dreifuss muscular dystrophy glioblastoma primitive neuroectodermal tumor juvenile dermatomyositis anorexia nervosa lung adenocarcinoma autism spectrum disorder malignant glioma myocardial infarction depressive disorder osteosarcoma pancreatic intraductal papillary-mucinous carcinoma epilepsy Pick disease schizophrenia heart failure intellectual disability subependymal giant cell astrocytoma adrenal cortex carcinoma large cell medulloblastoma astrocytic tumor malignant colon neoplasm maturity-onset diabetes of the young non-small cell lung carcinoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	P-type ATPase (P-ATPase)	P-ATPase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	P-type ATPase	Calcium ATPase sarco/endoplasmic reticulum (SERCA2a), E2-ATP state

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.