6Y0X

Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Fungal_lectin	e6y0xA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Fungal_lectin	ECOD (1.6)
B	Fungal_lectin	e6y0xB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Fungal_lectin	ECOD (1.6)
E [auth C]	Fungal_lectin	e6y0xC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Fungal_lectin	ECOD (1.6)
H [auth D]	Fungal_lectin	e6y0xD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Fungal_lectin	ECOD (1.6)
J [auth E]	Fungal_lectin	e6y0xE1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Fungal_lectin	ECOD (1.6)
L [auth F]	Fungal_lectin	e6y0xF1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Fungal_lectin	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E [auth C], H [auth D], J [auth E], A, B, E [auth C], H [auth D], J [auth E], L [auth F]	PF07938	Fungal fucose-specific lectin (Fungal_lectin)	Fungal fucose-specific lectin	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, E [auth C], H [auth D], J [auth E], A, B, E [auth C], H [auth D], J [auth E], L [auth F]	Fucose-binding lectin protein	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	-	-
C [auth I], F [auth K], N [auth R]	SB6	-	-	-
D [auth J], G [auth L], I [auth M], K [auth O], M [auth Q]	SB6	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E [auth C], H [auth D], J [auth E], A, B, E [auth C], H [auth D], J [auth E], L [auth F]	IPR012475	Fucose-specific lectin	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C [auth I], F [auth K], N [auth R]	DAL	RESID: AA0111 , AA0191 PSI-MOD : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
C [auth I], F [auth K], N [auth R]	DLE	RESID: AA0111 , AA0191 , AA0197 PSI-MOD : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-leucine MOD:00204
C [auth I], F [auth K], N [auth R]	DLY	RESID: AA0111 , AA0191 , AA0197
C [auth I], F [auth K], N [auth R]	DTY	RESID: AA0111 , AA0191 , AA0197
D [auth J], G [auth L], I [auth M], K [auth O], M [auth Q]	DAL	RESID: AA0111 , AA0191 , AA0197 , AA0111 , AA0191 PSI-MOD : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-leucine MOD:00204 , meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
D [auth J], G [auth L], I [auth M], K [auth O], M [auth Q]	DLE	RESID: AA0111 , AA0191 , AA0197 , AA0111 , AA0191 , AA0197 PSI-MOD : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-leucine MOD:00204 , meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-leucine MOD:00204
D [auth J], G [auth L], I [auth M], K [auth O], M [auth Q]	DLY	RESID: AA0111 , AA0191 , AA0197 , AA0111 , AA0191 , AA0197
D [auth J], G [auth L], I [auth M], K [auth O], M [auth Q]	DTY	RESID: AA0111 , AA0191 , AA0197 , AA0111 , AA0191 , AA0197
D [auth J], G [auth L], I [auth M], K [auth O], M [auth Q]	NH2	RESID: AA0111 , AA0191 , AA0197 , AA0111 , AA0191 , AA0197 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 PSI-MOD : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-leucine MOD:00204 , meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-leucine MOD:00204 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.