6WJL
Crystal structure of Glypican-2 core protein in complex with D3 Fab
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth G] | SCOP2 Family | Glypican-like | 8102914 | 4006165 | SCOP2 (2022-06-29) |
A [auth G] | SCOP2 Superfamily | Frizzled domain-like | 8102915 | 3001950 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | Glypican_1st | e6wjlG1 | A: alpha complex topology | X: Glypican insertion domain (From Topology) | H: Glypican insertion domain (From Topology) | T: Glypican insertion domain | F: Glypican_1st | ECOD (1.6) |
A [auth G] | Glypican_2nd | e6wjlG2 | A: few secondary structure elements | X: Frizzled cysteine-rich domain-related (From Topology) | H: Frizzled cysteine-rich domain-related (From Topology) | T: Frizzled cysteine-rich domain-related | F: Glypican_2nd | ECOD (1.6) |
E | Glypican_1st | e6wjlE2 | A: alpha complex topology | X: Glypican insertion domain (From Topology) | H: Glypican insertion domain (From Topology) | T: Glypican insertion domain | F: Glypican_1st | ECOD (1.6) |
E | Glypican_2nd | e6wjlE1 | A: few secondary structure elements | X: Frizzled cysteine-rich domain-related (From Topology) | H: Frizzled cysteine-rich domain-related (From Topology) | T: Frizzled cysteine-rich domain-related | F: Glypican_2nd | ECOD (1.6) |
B [auth H] | V-set_8 | e6wjlH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e6wjlH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
F | V-set_8 | e6wjlF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
F | C1-set_1 | e6wjlF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth K] | V-set_12 | e6wjlK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
G [auth I] | V-set_10 | e6wjlI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_10 | ECOD (1.6) |
D [auth L] | C1-set_4 | e6wjlL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
D [auth L] | V-set | e6wjlL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth J] | C1-set_4 | e6wjlJ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
H [auth J] | V-set | e6wjlJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H], F | Heavy Chain | IGHV3 | - | glypican-2 | SAbDab (2024-12-13) |
D [auth L], H [auth J] | Light Chain | IGKV1 | Kappa | glypican-2 | SAbDab (2024-12-13) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth G], E | IPR001863 | Glypican | Family |
A [auth G], E | IPR019803 | Glypican, conserved site | Conserved Site |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth G], E | Q8N158 | :