6SGB
mt-SSU assemblosome of Trypanosoma brucei
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| XA [auth Fc] | SCOP2 Family | Acyl-carrier protein (ACP) | 8095574 | 4000857 | SCOP2 (2022-06-29) |
| XA [auth Fc] | SCOP2 Superfamily | ACP-like | 8095575 | 3001805 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth CF] | Ribosomal_S6_1 | e6sgbCF1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6_1 | ECOD (1.6) |
| FA [auth FC] | PseudoU_synth_1 | e6sgbFC1 | A: a+b two layers | X: Alpha-beta plaits | H: Pseudouridine synthase (From Topology) | T: Pseudouridine synthase | F: PseudoU_synth_1 | ECOD (1.6) |
| IA [auth FM] | NAD_binding_11 | e6sgbFM1 | A: alpha arrays | X: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | H: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: NAD_binding_11 | ECOD (1.6) |
| IA [auth FM] | NAD_binding_2 | e6sgbFM2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: NAD_binding_2 | ECOD (1.6) |
| JA [auth FN] | NAD_binding_11 | e6sgbFN1 | A: alpha arrays | X: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | H: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology) | T: 6-phosphogluconate dehydrogenase C-terminal domain-like | F: NAD_binding_11 | ECOD (1.6) |
| JA [auth FN] | NAD_binding_2 | e6sgbFN2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: NAD_binding_2 | ECOD (1.6) |
| LA [auth FP] | ADP_ribosyl_GH | e6sgbFP1 | A: alpha bundles | X: ADP-ribosylglycohydrolase (From Topology) | H: ADP-ribosylglycohydrolase (From Topology) | T: ADP-ribosylglycohydrolase | F: ADP_ribosyl_GH | ECOD (1.6) |
| XA [auth Fc] | PP-binding | e6sgbFc1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
| GC [auth DJ] | UNK_F_TYPE | e6sgbDJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: UNK_F_TYPE | ECOD (1.6) |
| UC [auth FK] | MAM33 | e6sgbFK1 | A: a+b two layers | X: Acidic mitochondrial matrix protein p32-like | H: Acidic mitochondrial matrix protein p32 (From Topology) | T: Acidic mitochondrial matrix protein p32 | F: MAM33 | ECOD (1.6) |
| WC [auth FV] | MAM33 | e6sgbFV1 | A: a+b two layers | X: Acidic mitochondrial matrix protein p32-like | H: Acidic mitochondrial matrix protein p32 (From Topology) | T: Acidic mitochondrial matrix protein p32 | F: MAM33 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| Z [auth F6] | PF14687 | Domain of unknown function (DUF4460) (DUF4460) | Domain of unknown function (DUF4460) | - | Family |
| EA [auth FB], FA [auth FC] | PF00550 | Phosphopantetheine attachment site (PP-binding) | Phosphopantetheine attachment site | A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ... | Domain |
| MA [auth FQ], NA [auth FR], OA [auth FS], PA [auth FT], QA [auth FU] | PF02214 | BTB/POZ domain (BTB_2) | BTB/POZ domain | In voltage-gated K+ channels this domain is responsible for subfamily-specific assembly of alpha-subunits into functional tetrameric channels [1]. In KCTD1 (Swiss:Q719H9) this domain functions as a transcriptional repressor [2]. It also mediates homo ... | Domain |
| RA [auth FW] | PF01451 | Low molecular weight phosphotyrosine protein phosphatase (LMWPc) | Low molecular weight phosphotyrosine protein phosphatase | - | Domain |
| SA [auth FX] | PF13812 | Pentatricopeptide repeat domain (PPR_3) | Pentatricopeptide repeat domain | - | Repeat |
| TB [auth CI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| IC [auth DT] | PF00581 | Rhodanese-like domain (Rhodanese) | Rhodanese-like domain | Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. | Domain |
| NC [auth F1] | PF09243 | Mitochondrial small ribosomal subunit Rsm22 (Rsm22) | Mitochondrial small ribosomal subunit Rsm22 | - | Family |
| PC [auth FD] | PF14311 | Probable Zinc-ribbon domain (DUF4379) | Probable Zinc-ribbon domain | - | Family |
| QC [auth FF] | PF01795 | MraW methylase family (Methyltransf_5) | MraW methylase family | - | Family |
