6QI5

Near Atomic Structure of an Atadenovirus Shows a possible gene duplication event and Intergenera Variations in Cementing Proteins

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Adeno_hexon	e6qi5A1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
A	Adeno_hexon_C	e6qi5A2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
B [auth L]	Adeno_hexon	e6qi5L1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
B [auth L]	Adeno_hexon_C	e6qi5L2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
C [auth K]	Adeno_hexon	e6qi5K1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
C [auth K]	Adeno_hexon_C	e6qi5K2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
D [auth J]	Adeno_hexon	e6qi5J2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
D [auth J]	Adeno_hexon_C	e6qi5J1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
E [auth H]	Adeno_hexon	e6qi5H2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
E [auth H]	Adeno_hexon_C	e6qi5H1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
F [auth I]	Adeno_hexon	e6qi5I1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
F [auth I]	Adeno_hexon_C	e6qi5I2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
G	Adeno_hexon	e6qi5G1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
G	Adeno_hexon_C	e6qi5G2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
H [auth F]	Adeno_hexon	e6qi5F1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
H [auth F]	Adeno_hexon_C	e6qi5F2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
I [auth E]	Adeno_hexon	e6qi5E1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
I [auth E]	Adeno_hexon_C	e6qi5E2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
J [auth D]	Adeno_hexon	e6qi5D2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
J [auth D]	Adeno_hexon_C	e6qi5D1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
L [auth B]	Adeno_hexon	e6qi5B2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
L [auth B]	Adeno_hexon_C	e6qi5B1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
K [auth C]	Adeno_hexon	e6qi5C2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon	ECOD (1.6)
K [auth C]	Adeno_hexon_C	e6qi5C1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Adeno_hexon_C	ECOD (1.6)
M [auth S]	Glyco_hydro_120	e6qi5S1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
N [auth T]	Glyco_hydro_120	e6qi5T1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
O [auth R]	Glyco_hydro_120	e6qi5R1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
P [auth Q]	Glyco_hydro_120	e6qi5Q1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
S [auth N]	Hex_IIIa	e6qi5N2	A: alpha arrays	X: N-terminal domain of hexon-associated protein (IIIa) (From Topology)	H: N-terminal domain of hexon-associated protein (IIIa) (From Topology)	T: N-terminal domain of hexon-associated protein (IIIa)	F: Hex_IIIa	ECOD (1.6)
S [auth N]	Hex_IIIa	e6qi5N1	A: alpha bundles	X: Middle domain of hexon-associated protein (IIIa) (From Topology)	H: Middle domain of hexon-associated protein (IIIa) (From Topology)	T: Middle domain of hexon-associated protein (IIIa)	F: Hex_IIIa	ECOD (1.6)
T [auth M]	Adeno_Penton_B_2nd	e6qi5M1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in Adenovirus penton base protein (From Topology)	T: Jelly-roll domain in Adenovirus penton base protein	F: Adeno_Penton_B_2nd	ECOD (1.6)
T [auth M]	Adeno_Penton_B_1st	e6qi5M2	A: a+b complex topology	X: Insertion domain in Adenovirus penton base protein (From Topology)	H: Insertion domain in Adenovirus penton base protein (From Topology)	T: Insertion domain in Adenovirus penton base protein	F: Adeno_Penton_B_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	PF01065	Hexon, adenovirus major coat protein, N-terminal domain (Adeno_hexon)	Hexon, adenovirus major coat protein, N-terminal domain	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ...	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices [1]. The N and C-terminal domains adopt the same PNGase F-like fold although they are significantly different in length.	Domain
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	PF03678	Hexon, adenovirus major coat protein, C-terminal domain (Adeno_hexon_C)	Hexon, adenovirus major coat protein, C-terminal domain	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ...	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices [1]. The N and C-terminal domains adopt the same PNGase F-like fold although they are significantly different in length.	Domain
M [auth S], N [auth T], O [auth R], P [auth Q]	PF01696	Adenovirus EB1 55K protein / large t-antigen (Adeno_E1B_55K)	Adenovirus EB1 55K protein / large t-antigen	-	Repeat
S [auth N]	PF02455	Hexon-associated protein (IIIa) (Hex_IIIa)	Hexon-associated protein (IIIa)	-	Family
T [auth M]	PF01686	Adenovirus penton base protein (Adeno_Penton_B)	Adenovirus penton base protein	-	Family
Q [auth P], R [auth O]	PF01310	Adenovirus hexon associated protein, protein VIII (Adeno_PVIII)	Adenovirus hexon associated protein, protein VIII	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	Hexon protein	-	microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction	host cellular component host cell cellular anatomical entity host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid
M [auth S], N [auth T], O [auth R], P [auth Q]	Protein LH3	-	-	-
S [auth N]	PIIIa	-	-	viral capsid virion component
T [auth M]	Penton protein	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell symbiont entry into host cellular process endocytosis involved in viral entry into host cell endocytosis transport of virus	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid
Q [auth P], R [auth O]	Pre-hexon-linking protein VIII	hexon binding protein binding binding	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR044942	Adenovirus Pll, hexon, subdomain 2	Homologous Superfamily
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016110	Adenovirus Pll, hexon, subdomain 3	Homologous Superfamily
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016107	Adenovirus Pll, hexon, N-terminal	Domain
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016108	Adenovirus Pll, hexon, C-terminal	Domain
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
M [auth S], N [auth T], O [auth R], P [auth Q]	IPR002612	Adenovirus large t-antigen, E1B 55kDa protein	Family
M [auth S], N [auth T], O [auth R], P [auth Q]	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily
S [auth N]	IPR003479	Pre-hexon-linking protein IIIa	Family
S [auth N]	IPR043053	Pre-hexon-linking protein IIIa, N-terminal	Homologous Superfamily
T [auth M]	IPR002605	Adenovirus penton base protein	Family
Q [auth P], R [auth O]	IPR000646	Pre-hexon-linking protein VIII	Family