Skip to main content

 6PYD | pdb_00006pyd

Structure of 3E9 antibody Fab bound to marinobufagenin

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth H]d6pydh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
C [auth A]d6pyda_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth L]d6pydl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth L]d6pydl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
D [auth B]d6pydb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
D [auth B]d6pydb2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth H]e6pydH1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
C [auth A]e6pydA1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
B [auth L]e6pydL1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
D [auth B]e6pydB1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
C [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
D [auth B]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A [auth H],
C [auth A]		Fab 3E9, anti-marinobufagenin VH-CH1 Chimeric (chimeric) IGHV3-8*02, IGHJ2*01, IGHG4*01, IGHG4*04 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-4_KAPPA IMGT (202642-0)
B [auth L],
D [auth B]		Fab 3E9, anti-marinobufagenin L-KAPPA Chimeric (chimeric) IGKV1-117*01, IGKJ5*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-4_KAPPA IMGT (202642-0)