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6PUQ
1.56 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN
External Resource: Annotation
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
Flavodoxin_1
e6puqA1
A: a/b three-layered sandwiches
X: Flavodoxin-like
H: Flavoproteins/Phosphotyrosine protein phosphatases-like
T: Flavoproteins
F: Flavodoxin_1
ECOD (1.6)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF00258
Flavodoxin (Flavodoxin_1)
Flavodoxin
-
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Wybutosine biosynthesis protein Tyw1
binding
nucleotide binding
FMN binding
nucleoside phosphate binding
ion binding
organic cyclic compound binding
anion binding
heterocyclic compound binding
carbohydrate derivative binding
ribonucleotide binding
small molecule binding
oxo-acid-lyase activity
catalytic activity, acting on RNA
tRNA-4-demethylwyosine synthase activity
binding
nucleotide binding
FMN binding
nucleoside phosphate binding
ion binding
organic cyclic compound binding
anion binding
heterocyclic compound binding
carbohydrate derivative binding
ribonucleotide binding
small molecule binding
oxo-acid-lyase activity
catalytic activity, acting on RNA
tRNA-4-demethylwyosine synthase activity
catalytic activity, acting on a nucleic acid
catalytic activity, acting on a tRNA
lyase activity
catalytic activity
carbon-carbon lyase activity
iron-sulfur cluster binding
4 iron, 4 sulfur cluster binding
metal cluster binding
electron transfer activity
cation binding
metal ion binding
Less
glycosyl compound metabolic process
wybutosine metabolic process
cellular biosynthetic process
carbohydrate derivative metabolic process
RNA metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
tRNA processing
RNA processing
carbohydrate derivative biosynthetic process
glycosyl compound biosynthetic process
wybutosine biosynthetic process
cellular metabolic process
glycosyl compound metabolic process
wybutosine metabolic process
cellular biosynthetic process
carbohydrate derivative metabolic process
RNA metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
tRNA processing
RNA processing
carbohydrate derivative biosynthetic process
glycosyl compound biosynthetic process
wybutosine biosynthetic process
cellular metabolic process
tRNA modification
primary metabolic process
gene expression
nucleobase-containing compound biosynthetic process
macromolecule biosynthetic process
nucleic acid metabolic process
tRNA metabolic process
RNA modification
biosynthetic process
macromolecule modification
metabolic process
cellular process
macromolecule metabolic process
Less
membrane
cellular anatomical entity
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR007197
Radical SAM
Domain
A
IPR013785
Aldolase-type TIM barrel
Homologous Superfamily
A
IPR013917
tRNA wybutosine-synthesis
Domain
A
IPR008254
Flavodoxin/nitric oxide synthase
Domain
A
IPR034556
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
Family
A
IPR001226
Flavodoxin, conserved site
Conserved Site
A
IPR029039
Flavoprotein-like superfamily
Homologous Superfamily
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