6O6E
Crystal structure of PltF trapped with PltL using a proline adenosine vinylsulfonamide inhibitor
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d6o6eb1 | Multi-domain proteins (alpha and beta) | Acetyl-CoA synthetase-like | Acetyl-CoA synthetase-like | automated matches | automated matches | (Pseudomonas protegens Pf-5 ) [TaxId: 220664 ], | SCOPe (2.08) |
A [auth B] | d6o6eb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Pseudomonas protegens Pf-5 ) [TaxId: 220664 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | AMP-binding_3rd | e6o6eB3 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_3rd | ECOD (1.6) |
A [auth B] | AMP-binding_C | e6o6eB1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: a+b domain in acetyl-CoA synthetase-like proteins (From Topology) | T: a+b domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_C | ECOD (1.6) |
A [auth B] | AMP-binding_1st | e6o6eB4 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_1st | ECOD (1.6) |
A [auth B] | AMP-binding_2nd | e6o6eB2 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_2nd | ECOD (1.6) |
B [auth E] | PP-binding | e6o6eE1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.30.300.30 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (utative) |
B [auth E] | 1.10.1200.10 | Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF00501 | AMP-binding enzyme (AMP-binding) | AMP-binding enzyme | - | Family |
A [auth B] | PF13193 | AMP-binding enzyme C-terminal domain (AMP-binding_C) | AMP-binding enzyme C-terminal domain | This is a small domain that is found C terminal to Pfam:PF00501. It has a central beta sheet core that is flanked by alpha helices. | Domain |
B [auth E] | PF00550 | Phosphopantetheine attachment site (PP-binding) | Phosphopantetheine attachment site | A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR020459 | AMP-binding | Domain |
A [auth B] | IPR010071 | Amino acid adenylation domain | Domain |
A [auth B] | IPR020845 | AMP-binding, conserved site | Conserved Site |
A [auth B] | IPR045851 | AMP-binding enzyme, C-terminal domain superfamily | Homologous Superfamily |
A [auth B] | IPR042099 | ANL, N-terminal domain | Homologous Superfamily |
A [auth B] | IPR025110 | AMP-binding enzyme, C-terminal domain | Domain |
A [auth B] | IPR000873 | AMP-dependent synthetase/ligase domain | Domain |
B [auth E] | IPR009081 | Phosphopantetheine binding ACP domain | Domain |
B [auth E] | IPR036736 | ACP-like superfamily | Homologous Superfamily |