Annotations: 6BI4

2.9 Angstrom Resolution Crystal Structure of dTDP-Glucose 4,6-dehydratase (rfbB) from Bacillus anthracis str. Ames in Complex with NAD.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6bi4d1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
D	d6bi4d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
C	d6bi4c1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
C	d6bi4c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
B	d6bi4b1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
B	d6bi4b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
A	d6bi4a1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
A	d6bi4a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	SDR-like	8066226	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8066226	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8066226	3000038	SCOP2B (2022-06-29)
A	SCOP2 Family	UDP-glucose 4-epimerase GalE-lke	8066225	4000088	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8066226	3000038	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Glycoprot_B_PH2	e6bi4D1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: Glycoprot_B_PH2	ECOD (v295.2)
C	Glycoprot_B_PH2	e6bi4C1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: Glycoprot_B_PH2	ECOD (v295.2)
B	Glycoprot_B_PH2	e6bi4B1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: Glycoprot_B_PH2	ECOD (v295.2)
A	Glycoprot_B_PH2	e6bi4A1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: Glycoprot_B_PH2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16363	GDP-mannose 4,6 dehydratase (GDP_Man_Dehyd)	GDP-mannose 4,6 dehydratase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	dTDP-glucose 4,6-dehydratase	hydro-lyase activity lyase activity dTDP-glucose 4,6-dehydratase activity catalytic activity carbon-oxygen lyase activity	nucleoside phosphate metabolic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process primary metabolic process nucleobase-containing compound metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR005888	dTDP-glucose 4,6-dehydratase	Family
A, B, C, D	IPR016040	NAD(P)-binding domain	Domain