5URX | pdb_00005urx

Structure of the contracted type VI secretion system sheath in Myxococcus xanthus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth 3B]	APG6	e5urx3B1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
X [auth 2L]	APG6	e5urx2L1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
V [auth 2J]	APG6	e5urx2J1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
T [auth 2H]	APG6	e5urx2H1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
R [auth 2F]	APG6	e5urx2F1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
P [auth 2D]	APG6	e5urx2D1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
N [auth 2B]	APG6	e5urx2B1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
L [auth 1L]	APG6	e5urx1L1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
JA [auth 3L]	APG6	e5urx3L1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
J [auth 1J]	APG6	e5urx1J1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
HA [auth 3J]	APG6	e5urx3J1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
H [auth 1H]	APG6	e5urx1H1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
FA [auth 3H]	APG6	e5urx3H1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
F [auth 1F]	APG6	e5urx1F1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
DA [auth 3F]	APG6	e5urx3F1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
D [auth 1D]	APG6	e5urx1D1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
BA [auth 3D]	APG6	e5urx3D1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
B [auth 1B]	APG6	e5urx1B1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: APG6	ECOD (v295.2)
Y [auth 3A]	AAA_lid_3	e5urx3A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
W [auth 2K]	AAA_lid_3	e5urx2K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
U [auth 2I]	AAA_lid_3	e5urx2I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
S [auth 2G]	AAA_lid_3	e5urx2G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
Q [auth 2E]	AAA_lid_3	e5urx2E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
O [auth 2C]	AAA_lid_3	e5urx2C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
M [auth 2A]	AAA_lid_3	e5urx2A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
K [auth 1K]	AAA_lid_3	e5urx1K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
IA [auth 3K]	AAA_lid_3	e5urx3K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
I [auth 1I]	AAA_lid_3	e5urx1I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
GA [auth 3I]	AAA_lid_3	e5urx3I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
G [auth 1G]	AAA_lid_3	e5urx1G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
EA [auth 3G]	AAA_lid_3	e5urx3G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
E [auth 1E]	AAA_lid_3	e5urx1E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
CA [auth 3E]	AAA_lid_3	e5urx3E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
C [auth 1C]	AAA_lid_3	e5urx1C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
AA [auth 3C]	AAA_lid_3	e5urx3C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)
A [auth 1A]	AAA_lid_3	e5urx1A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_3	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	PF05943	EvpB/VC_A0108, tail sheath N-terminal domain (VipB)	EvpB/VC_A0108, tail sheath N-terminal domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1].	Domain
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	PF18945	EvpB/VC_A0108, tail sheath gpW/gp25-like domain (VipB_2)	EvpB/VC_A0108, tail sheath gpW/gp25-like domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/Vip ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1]. This entry represents the gpW/gp25-like domain.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR010269	Type VI secretion system TssC-like	Family
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR044032	TssC1, C-terminal	Domain
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR044031	TssC1, N-terminal	Domain
A [auth 1A], AA [auth 3C], C [auth 1C], CA [auth 3E], E [auth 1E], A [auth 1A], AA [auth 3C], C [auth 1C], CA [auth 3E], E [auth 1E], EA [auth 3G], G [auth 1G], GA [auth 3I], I [auth 1I], IA [auth 3K], K [auth 1K], M [auth 2A], O [auth 2C], Q [auth 2E], S [auth 2G], U [auth 2I], W [auth 2K], Y [auth 3A]	IPR008312	Type VI secretion system sheath protein TssB1	Family