5URX

Structure of the contracted type VI secretion system sheath in Myxococcus xanthus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth 1B]	VipB_C	e5urx1B2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
B [auth 1B]	VipB_N	e5urx1B1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
BA [auth 3D]	VipB_C	e5urx3D1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
BA [auth 3D]	VipB_N	e5urx3D2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
D [auth 1D]	VipB_C	e5urx1D1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
D [auth 1D]	VipB_N	e5urx1D2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
DA [auth 3F]	VipB_C	e5urx3F2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
DA [auth 3F]	VipB_N	e5urx3F1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
F [auth 1F]	VipB_C	e5urx1F1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
F [auth 1F]	VipB_N	e5urx1F2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
FA [auth 3H]	VipB_C	e5urx3H2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
FA [auth 3H]	VipB_N	e5urx3H1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
H [auth 1H]	VipB_C	e5urx1H1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
H [auth 1H]	VipB_N	e5urx1H2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
HA [auth 3J]	VipB_C	e5urx3J2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
HA [auth 3J]	VipB_N	e5urx3J1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
J [auth 1J]	VipB_C	e5urx1J2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
J [auth 1J]	VipB_N	e5urx1J1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
JA [auth 3L]	VipB_C	e5urx3L1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
JA [auth 3L]	VipB_N	e5urx3L2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
L [auth 1L]	VipB_C	e5urx1L1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
L [auth 1L]	VipB_N	e5urx1L2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
N [auth 2B]	VipB_C	e5urx2B1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
N [auth 2B]	VipB_N	e5urx2B2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
P [auth 2D]	VipB_C	e5urx2D1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
P [auth 2D]	VipB_N	e5urx2D2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
R [auth 2F]	VipB_C	e5urx2F1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
R [auth 2F]	VipB_N	e5urx2F2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
T [auth 2H]	VipB_C	e5urx2H2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
T [auth 2H]	VipB_N	e5urx2H1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
V [auth 2J]	VipB_C	e5urx2J2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
V [auth 2J]	VipB_N	e5urx2J1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
X [auth 2L]	VipB_C	e5urx2L2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
X [auth 2L]	VipB_N	e5urx2L1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)
Z [auth 3B]	VipB_C	e5urx3B1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: VipB_C	ECOD (1.6)
Z [auth 3B]	VipB_N	e5urx3B2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: VipB_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	PF05943	EvpB/VC_A0108, tail sheath N-terminal domain (VipB)	EvpB/VC_A0108, tail sheath N-terminal domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1].	Domain
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	PF18945	EvpB/VC_A0108, tail sheath gpW/gp25-like domain (VipB_2)	EvpB/VC_A0108, tail sheath gpW/gp25-like domain	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/Vip ...	EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1]. This entry represents the gpW/gp25-like domain.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1A], AA [auth 3C], C [auth 1C], CA [auth 3E], E [auth 1E], A [auth 1A], AA [auth 3C], C [auth 1C], CA [auth 3E], E [auth 1E], EA [auth 3G], G [auth 1G], GA [auth 3I], I [auth 1I], IA [auth 3K], K [auth 1K], M [auth 2A], O [auth 2C], Q [auth 2E], S [auth 2G], U [auth 2I], W [auth 2K], Y [auth 3A]	IPR008312	Type VI secretion system sheath protein TssB1	Family
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR010269	Type VI secretion system TssC-like	Family
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR044032	TssC1, C-terminal	Domain
B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], B [auth 1B], BA [auth 3D], D [auth 1D], DA [auth 3F], F [auth 1F], FA [auth 3H], H [auth 1H], HA [auth 3J], J [auth 1J], JA [auth 3L], L [auth 1L], N [auth 2B], P [auth 2D], R [auth 2F], T [auth 2H], V [auth 2J], X [auth 2L], Z [auth 3B]	IPR044031	TssC1, N-terminal	Domain