5NM7
Crystal structure of Burkholderia AP3 phage endolysin
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | PG_binding_1 | e5nm7G1 | A: alpha arrays | X: PGBD-like (From Topology) | H: PGBD-like (From Topology) | T: PGBD-like | F: PG_binding_1 | ECOD (1.6) |
A [auth G] | UNK_F_TYPE | e5nm7G2 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: UNK_F_TYPE | ECOD (1.6) |
B [auth A] | PG_binding_1 | e5nm7A1 | A: alpha arrays | X: PGBD-like (From Topology) | H: PGBD-like (From Topology) | T: PGBD-like | F: PG_binding_1 | ECOD (1.6) |
B [auth A] | UNK_F_TYPE | e5nm7A2 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth G] | 1.10.101.10 | Mainly Alpha | Orthogonal Bundle | Muramoyl-pentapeptide Carboxypeptidase | domain 1 | CATH (utative) |
B [auth A] | 1.10.101.10 | Mainly Alpha | Orthogonal Bundle | Muramoyl-pentapeptide Carboxypeptidase | domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G], B [auth A] | PF11860 | N-acetylmuramidase (Muramidase) | N-acetylmuramidase | - | Family |
A [auth G], B [auth A] | PF01471 | Putative peptidoglycan binding domain (PG_binding_1) | Putative peptidoglycan binding domain | This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ... | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth G], B [auth A] | IPR002477 | Peptidoglycan binding-like | Domain |
A [auth G], B [auth A] | IPR036365 | PGBD-like superfamily | Homologous Superfamily |
A [auth G], B [auth A] | IPR036366 | PGBD superfamily | Homologous Superfamily |
A [auth G], B [auth A] | IPR024408 | N-acetylmuramidase | Domain |