5MU3

Crystal structure of Ctf19-Mcm21 kinetochore assembly bound with Ctf19-Mcm21 binding motif of central kinetochore subunit Okp1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RWD domain-like	8053988	3000774	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	RWD domain-like	8053988	3000774	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	RWD domain-like	8053997	3000774	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	RWD domain-like	8053997	3000774	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e5mu3A2	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF09496	e5mu3A1	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: PF09496	ECOD (1.6)
D	F_UNCLASSIFIED	e5mu3D1	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
D	PF09496	e5mu3D2	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: PF09496	ECOD (1.6)
B	PF22462	e5mu3B2	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: PF22462	ECOD (1.6)
B	PF22463	e5mu3B1	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: PF22463	ECOD (1.6)
E	PF22462	e5mu3E2	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: PF22462	ECOD (1.6)
E	PF22463	e5mu3E1	A: a+b two layers	X: Kinetochore globular domain-like (From Topology)	H: Kinetochore globular domain-like (From Topology)	T: Kinetochore globular domain-like	F: PF22463	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.12050	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
E	3.40.50.12050	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D	PF09496	Cenp-O kinetochore centromere component (CENP-O)	Cenp-O kinetochore centromere component	-	Family
B	PF22463	Ctf19, first RWD domain (Ctf19_RWD1)	Ctf19, first RWD domain	This entry represents the first occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis of ...	This entry represents the first occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis of the kinetochore. The CCAN governs the timing of kinetochore assembly, establishes its position through interaction with a specialised nucleosome containing the histone H3 variant Cse4/CENP-A, and determines the arrangement of the microtubule attachment machinery. In this way, eukaryotic kinetochores establish a connection between spindle microtubules and chromosomal centromeres [1,2].	Domain
B	PF22462	Ctf19, second RWD domain (Ctf19_RWD2)	Ctf19, second RWD domain	This entry represents the second occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis o ...	This entry represents the second occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis of the kinetochore. The CCAN governs the timing of kinetochore assembly, establishes its position through interaction with a specialized nucleosome containing the histone H3 variant Cse4/CENP-A, and determines the arrangement of the microtubule attachment machinery. In this way, eukaryotic kinetochores establish a connection between spindle microtubules and chromosomal centromeres [1,2].	Domain
E	PF22463	Ctf19, first RWD domain (Ctf19_RWD1)	Ctf19, first RWD domain	This entry represents the first occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis of ...	This entry represents the first occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis of the kinetochore. The CCAN governs the timing of kinetochore assembly, establishes its position through interaction with a specialised nucleosome containing the histone H3 variant Cse4/CENP-A, and determines the arrangement of the microtubule attachment machinery. In this way, eukaryotic kinetochores establish a connection between spindle microtubules and chromosomal centromeres [1,2].	Domain
E	PF22462	Ctf19, second RWD domain (Ctf19_RWD2)	Ctf19, second RWD domain	This entry represents the second occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis o ...	This entry represents the second occurrence of the RWD domain within the Ctf19 subunit of the inner kinetochore in Kluyveromyces lactis. Ctf19 is a component of the constitutive centromere associated network (CCAN), which forms the structural basis of the kinetochore. The CCAN governs the timing of kinetochore assembly, establishes its position through interaction with a specialized nucleosome containing the histone H3 variant Cse4/CENP-A, and determines the arrangement of the microtubule attachment machinery. In this way, eukaryotic kinetochores establish a connection between spindle microtubules and chromosomal centromeres [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D	Central kinetochore subunit MCM21	-	sexual reproduction reproductive process meiotic cell cycle cellular process cell cycle cell division protein-containing complex organization chromosome organization protein-DNA complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization organelle organization cellular component assembly sexual reproduction reproductive process meiotic cell cycle cellular process cell cycle cell division protein-containing complex organization chromosome organization protein-DNA complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization organelle organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis centromere complex assembly	intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	Central kinetochore subunit CTF19	-	sexual reproduction reproductive process meiotic cell cycle cellular process cell cycle cell division	intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, F	Central kinetochore subunit Okp1	-	sexual reproduction reproductive process meiotic cell cycle cellular process cell cycle cell division	intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
E	Central kinetochore subunit CTF19	-	sexual reproduction reproductive process meiotic cell cycle cellular process cell cycle cell division	intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure chromosome cellular anatomical entity chromosomal region kinetochore intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D	IPR018464	Centromere protein O	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
E	CSX	Parent Component: CYS RESID: AA0451 PSI-MOD : 2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide MOD:01380

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.