5KL8
Crystal structure of the Pumilio-Nos-CyclinB RNA complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00806 | e5kl8A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00806 | ECOD (1.6) |
B | PF05741 | e5kl8B1 | A: few secondary structure elements | X: zinc-finger domain of Nanos (From Topology) | H: zinc-finger domain of Nanos (From Topology) | T: zinc-finger domain of Nanos | F: PF05741 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
B | 4.10.60.30 | Few Secondary Structures | Irregular | HIV-1 Nucleocapsid Protein | Nanos, RNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00806 | Pumilio-family RNA binding repeat (PUF) | Pumilio-family RNA binding repeat | - | Repeat | |
PF05741 | Nanos RNA binding domain (zf-nanos) | Nanos RNA binding domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR001313 | Pumilio RNA-binding repeat | Repeat | |
IPR033712 | Pumilio, RNA binding domain | Domain | |
IPR033133 | Pumilio homology domain | Domain | |
IPR008705 | Nanos/Xcat2 | Family | |
IPR038129 | Nanos domain superfamily | Homologous Superfamily | |
IPR024161 | Zinc finger, nanos-type | Domain |